View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7802_low_24 (Length: 362)

Name: NF7802_low_24
Description: NF7802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7802_low_24
NF7802_low_24
[»] scaffold0366 (4 HSPs)
scaffold0366 (16-266)||(9743-9995)
scaffold0366 (59-196)||(12457-12594)
scaffold0366 (207-266)||(13602-13661)
scaffold0366 (16-47)||(12405-12436)
[»] scaffold0623 (1 HSPs)
scaffold0623 (16-196)||(1461-1641)
[»] scaffold0459 (3 HSPs)
scaffold0459 (59-196)||(11150-11287)
scaffold0459 (207-266)||(12295-12354)
scaffold0459 (16-47)||(11098-11129)


Alignment Details
Target: scaffold0366 (Bit Score: 182; Significance: 2e-98; HSPs: 4)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 16 - 266
Target Start/End: Original strand, 9743 - 9995
Alignment:
Q  16 atatatatgaaacatacaacaaataggacctcnnnnnnnnnncttctttctaaataaggttgctcgctctacttttatcacgacactaaccccttgacaa 115  Q
    ||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9743 atatatatgaaacatacaacaaataggacctcttttttttttcttctttctaaataaggttgctcgctctacttttatcacgacactaaccccttgacaa 9842  T
Q  116 ctatacacacaacaagtaggacataatcagactaatattactgtaaatttttaacagcttcaaaaacttttgaaattatac--nnnnnnnnnntaagtgt 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||    
T  9843 ctatacacacaacaagtaggacataatcagactaatattactgtaaatttttaacagcttcaaaaacttttgaaattatacaaaaaaaaaaaataagtgt 9942  T
Q  214 atcttttgtggacctctacgatgattgtccactttaagagtgtgtttggtttg 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9943 atcttttgtggacctctacgatgattgtccactttaagagtgtgtttggtttg 9995  T

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Target: scaffold0366; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 59 - 196
Target Start/End: Original strand, 12457 - 12594
Alignment:
Q  59 ttctttctaaataaggttgctcgctctacttttatcacgacactaaccccttgacaactatacacacaacaagtaggacataatcagactaatattactg 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12457 ttctttctaaataaggttgctcgctctacttttatcacgacactaaccccttgacaactatacacacaacaagtaggacataatcagactaatattactg 12556  T
Q  159 taaatttttaacagcttcaaaaacttttgaaattatac 196  Q
    ||||||||||||||||||||||||||||||||||||||    
T  12557 taaatttttaacagcttcaaaaacttttgaaattatac 12594  T

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Target: scaffold0366; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 207 - 266
Target Start/End: Original strand, 13602 - 13661
Alignment:
Q  207 taagtgtatcttttgtggacctctacgatgattgtccactttaagagtgtgtttggtttg 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13602 taagtgtatcttttgtggacctctacgatgattgtccactttaagagtgtgtttggtttg 13661  T

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Target: scaffold0366; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 47
Target Start/End: Original strand, 12405 - 12436
Alignment:
Q  16 atatatatgaaacatacaacaaataggacctc 47  Q
    ||||||||||||||||||||||||||||||||    
T  12405 atatatatgaaacatacaacaaataggacctc 12436  T

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Target: scaffold0623 (Bit Score: 143; Significance: 5e-75; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 16 - 196
Target Start/End: Original strand, 1461 - 1641
Alignment:
Q  16 atatatatgaaacatacaacaaataggacctcnnnnnnnnnncttctttctaaataaggttgctcgctctacttttatcacgacactaaccccttgacaa 115  Q
    ||||||||||||||||||||||||||||||||           || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1461 atatatatgaaacatacaacaaataggacctctttttttttttttttttctaaataaggttgctcgctctacttttatcacgacactaaccccttgacaa 1560  T
Q  116 ctatacacacaacaagtaggacataatcagactaatattactgtaaatttttaacagcttcaaaaacttttgaaattatac 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1561 ctatacacacaacaagtaggacataatcagactaatattactgtaaatttttaacagcttcaaaaacttttgaaattatac 1641  T

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Target: scaffold0459 (Bit Score: 138; Significance: 4e-72; HSPs: 3)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 59 - 196
Target Start/End: Original strand, 11150 - 11287
Alignment:
Q  59 ttctttctaaataaggttgctcgctctacttttatcacgacactaaccccttgacaactatacacacaacaagtaggacataatcagactaatattactg 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11150 ttctttctaaataaggttgctcgctctacttttatcacgacactaaccccttgacaactatacacacaacaagtaggacataatcagactaatattactg 11249  T
Q  159 taaatttttaacagcttcaaaaacttttgaaattatac 196  Q
    ||||||||||||||||||||||||||||||||||||||    
T  11250 taaatttttaacagcttcaaaaacttttgaaattatac 11287  T

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Target: scaffold0459; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 207 - 266
Target Start/End: Original strand, 12295 - 12354
Alignment:
Q  207 taagtgtatcttttgtggacctctacgatgattgtccactttaagagtgtgtttggtttg 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12295 taagtgtatcttttgtggacctctacgatgattgtccactttaagagtgtgtttggtttg 12354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0459; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 47
Target Start/End: Original strand, 11098 - 11129
Alignment:
Q  16 atatatatgaaacatacaacaaataggacctc 47  Q
    ||||||||||||||||||||||||||||||||    
T  11098 atatatatgaaacatacaacaaataggacctc 11129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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