View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7802_low_26 (Length: 349)

Name: NF7802_low_26
Description: NF7802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7802_low_26
NF7802_low_26
[»] chr3 (1 HSPs)
chr3 (17-309)||(29207360-29207656)


Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 17 - 309
Target Start/End: Original strand, 29207360 - 29207656
Alignment:
Q  17 cagagaaaggattattaaagcattattatattataatagtaataatagtaaaagaggcaaaaagtgctaattatgtgatatagtgttgttggtaatgcac 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29207360 cagagaaaggattattaaagcattattatattataatagtaataatagtaaaagaggcaaaaagtgctaattatgtgatatagtgttgttggtaatgcac 29207459  T
Q  117 ttgatctaaataattgtggtccaataatatatatcatgtctaaccaacttaaaagaa----atatttgagtgcaaaattaagtgtggatgcctataacaa 212  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    ||||||||||||||||||||| |||||||||||||||||    
T  29207460 ttgatctaaataattgtggtccaataatatatatcaggtctaaccaacttaaaagaaatatatatttgagtgcaaaattaagcgtggatgcctataacaa 29207559  T
Q  213 ctatctaaagtatgacatatcaagaccacctttttcaaaattatttgaaaataggaatttgtctttctatatatagaagcaaatcaacacttaccaa 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29207560 ctatctaaagtatgacatatcaagaccacctttttcaaaattatttataaataggaatttgtctttctatatatagaagcaaatcaacacttaccaa 29207656  T

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