View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7802_low_27 (Length: 344)

Name: NF7802_low_27
Description: NF7802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7802_low_27
NF7802_low_27
[»] chr5 (2 HSPs)
chr5 (4-194)||(24428326-24428513)
chr5 (224-318)||(24428576-24428670)
[»] scaffold0790 (2 HSPs)
scaffold0790 (265-320)||(620-675)
scaffold0790 (136-177)||(445-486)
[»] chr1 (1 HSPs)
chr1 (290-321)||(36938052-36938083)
[»] chr6 (1 HSPs)
chr6 (289-321)||(29017958-29017990)
[»] chr4 (1 HSPs)
chr4 (290-318)||(46899888-46899916)
[»] chr3 (1 HSPs)
chr3 (290-326)||(44589419-44589455)


Alignment Details
Target: chr5 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 4 - 194
Target Start/End: Original strand, 24428326 - 24428513
Alignment:
Q  4 tttttattcatcgatcataaataaatattctaattttccgttttattcttctttcacgatt-cagtttcagtgttcctgaagctgcaccttttaccgccg 102  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  24428326 tttttattcatcgatcataaata----ttctaattttccgttttattcttctttcacgatttcagtttcagtgttcctgaagctgcaccttttaccgccg 24428421  T
Q  103 ttctcaaatttgcagctgaagaattcaaagttcctccacagaccagcgctattatcaccaatggtaatttctttctcaatcatcatcaccaa 194  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24428422 ttctcaaatttgcagctgaagaattcaaagttcccccacagaccagcgctattatcaccaatggtaatttctttctcaatcatcatcaccaa 24428513  T

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Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 224 - 318
Target Start/End: Original strand, 24428576 - 24428670
Alignment:
Q  224 aatttgattattcttgaacggactatgccatagggagattgatttttacgattttggggattttttagtgttgtcaattgtggatcacagaaaat 318  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24428576 aatttgattattcttgaacggactatgctatagggagattgatttttacgattttggggaatttttagtgttgtcaattgtggatcacagaaaat 24428670  T

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Target: scaffold0790 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0790
Description:

Target: scaffold0790; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 265 - 320
Target Start/End: Original strand, 620 - 675
Alignment:
Q  265 atttttacgattttggggattttttagtgttgtcaattgtggatcacagaaaatag 320  Q
    |||||||||| ||| |||||||||||||||||||||| || |||||||||||||||    
T  620 atttttacgaattttgggattttttagtgttgtcaatcgtcgatcacagaaaatag 675  T

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Target: scaffold0790; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 177
Target Start/End: Original strand, 445 - 486
Alignment:
Q  136 ctccacagaccagcgctattatcaccaatggtaatttctttc 177  Q
    ||||||| | ||||||||||||||||||||||||||||||||    
T  445 ctccacaaatcagcgctattatcaccaatggtaatttctttc 486  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 290 - 321
Target Start/End: Complemental strand, 36938083 - 36938052
Alignment:
Q  290 agtgttgtcaattgtggatcacagaaaatagc 321  Q
    ||||||||||||||||||||||||||||||||    
T  36938083 agtgttgtcaattgtggatcacagaaaatagc 36938052  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 321
Target Start/End: Original strand, 29017958 - 29017990
Alignment:
Q  289 tagtgttgtcaattgtggatcacagaaaatagc 321  Q
    ||||||||||||||||||||| |||||||||||    
T  29017958 tagtgttgtcaattgtggatcgcagaaaatagc 29017990  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 318
Target Start/End: Original strand, 46899888 - 46899916
Alignment:
Q  290 agtgttgtcaattgtggatcacagaaaat 318  Q
    |||||||||||||||||||||||||||||    
T  46899888 agtgttgtcaattgtggatcacagaaaat 46899916  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 326
Target Start/End: Original strand, 44589419 - 44589455
Alignment:
Q  290 agtgttgtcaattgtggatcacagaaaatagcttatt 326  Q
    |||||||||||||||||||||  ||||||||||||||    
T  44589419 agtgttgtcaattgtggatcatggaaaatagcttatt 44589455  T

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