View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7802_low_28 (Length: 340)
Name: NF7802_low_28
Description: NF7802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7802_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 6 - 322
Target Start/End: Original strand, 30701774 - 30702092
Alignment:
| Q |
6 |
tttcgtgttaagatttgtcaaaaaataaataaagattccatgttaagtcaatacatgtaaaatattttaaacatgtattctctatcctctaaatcccttc |
105 |
Q |
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| T |
30701774 |
tttcatgttaagatttgtcaaaaaataaataaagattccatgttaagtcaatacatgtaaaatattttaaacatgtattctctatcctctaaatcccctc |
30701873 |
T |
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| Q |
106 |
aaaatattgagggtatagataatttgtagcttgtttgatggtgcagtcgttagtaaaccaaactctcatttttctaaaacaaatatttttatatataaaa |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30701874 |
aaaatattgagggtatagataatttgtagcttgtttgatggtgcagtcgttagtaaaccaaactctcatttttctaaaacaaatatttttatatataaaa |
30701973 |
T |
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| Q |
206 |
gttttagcacaaaatctgcttctattaattatatgattattatct--tatatgaaatttactttaaatctccttgtaggatgcagagaaatattattagt |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30701974 |
gttttagcacaaaatctgcttctattaattatatgattattatcttatatatgaaatttactttaaatctccttgtaggatgcagagaaatattattagt |
30702073 |
T |
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| Q |
304 |
aataataatggggtgcatc |
322 |
Q |
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||||||||||||||||||| |
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| T |
30702074 |
aataataatggggtgcatc |
30702092 |
T |
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