View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7802_low_29 (Length: 337)
Name: NF7802_low_29
Description: NF7802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7802_low_29 |
 | |
|
| [»] scaffold0002 (2 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 13 - 323
Target Start/End: Original strand, 42254692 - 42254991
Alignment:
| Q |
13 |
attctagtgatacaccaaatcaaaggcctaagagattgatcaagagacctagcagattcaatacttaaatgtatctctataagccttcaaggaagagggt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
42254692 |
attctagtgatacaccaaatcaaaggcctaagagattgatcaagagacctagcagattcaatacttaaatgtatctctataagcattcaaggaagagggt |
42254791 |
T |
|
| Q |
113 |
aacttggaataaaaattagtacctgatacaaatatctctagtaccattagtacctgaaaaaggataagaataaaaatagttagcaattttcttttatatt |
212 |
Q |
| |
|
|| | || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42254792 |
aaatcc--------atgag---ctgatacaaatatctctagtaccattagtacctgaaaaaggataagaataaaaatagttagcaattttcttttatatt |
42254880 |
T |
|
| Q |
213 |
tttaatcaatgggatgaagacaattagtgtctcaatatcctatatcctatgaagaattgtatcgtctctagcattatatgaatcgtctttgcgtttggac |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
42254881 |
tttaatcaatgggatgaagacaattagtgtctcaatatcctatatcctaggaagaattgtatcgtctctagcattatatgaatcgtgtttgcgtttggac |
42254980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 13 - 323
Target Start/End: Original strand, 42281052 - 42281351
Alignment:
| Q |
13 |
attctagtgatacaccaaatcaaaggcctaagagattgatcaagagacctagcagattcaatacttaaatgtatctctataagccttcaaggaagagggt |
112 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||| |
|
|
| T |
42281052 |
attctagtgatagaccaaatcaaaggcctaagagattgatcaagagacctagcagattcaatacttaaatgtatatctagtagcattcaaggaagagggt |
42281151 |
T |
|
| Q |
113 |
aacttggaataaaaattagtacctgatacaaatatctctagtaccattagtacctgaaaaaggataagaataaaaatagttagcaattttcttttatat- |
211 |
Q |
| |
|
|| | || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
42281152 |
aaatcc--------atgag---ctgatacaaatatctctagtaccattagtacctgaaaaaggataagaataaaaatagttagcaatttttttttttata |
42281240 |
T |
|
| Q |
212 |
ttttaatcaatgggatgaagacaattagtgtctcaatatcctatatcctatgaagaattgtatcgtctctagcattatatgaatcgtctttgcgtttgga |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
42281241 |
ttttaatcaatgggatgaagacaattagtgtctcaatatcctatatcctaggaagaattgtatcgtctctagcattatatgaattgtgtttgcgtttgga |
42281340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 13 - 223
Target Start/End: Original strand, 42269281 - 42269479
Alignment:
| Q |
13 |
attctagtgatacaccaaatcaaaggcctaagagattgatcaagagacctagcagattcaatacttaaatgtatctctataagccttcaaggaagagggt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
42269281 |
attctagtgatacaccaaatcaaaggcccaagagattgatcaagagacctagcagattcaatacttaaatgtatctctagaagcattcaaggaagagggt |
42269380 |
T |
|
| Q |
113 |
aacttggaataaaaattagtacctgatacaaatatctctagtaccattagtacctgaaaaaggataagaataaaaatagttagcaattttcttttatatt |
212 |
Q |
| |
|
|| | || || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| || |||| ||||||| | |
|
|
| T |
42269381 |
aa--------atccatgag---ctgatacaaatatctctagtaccattagtacctgaaaaagcataagaataaaaataattaccagttttattttata-t |
42269468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 202 - 323
Target Start/End: Original strand, 42272567 - 42272687
Alignment:
| Q |
202 |
tcttttatatttttaatcaatgggatgaagacaattagtgtctcaatatcctatatcctatgaagaattgtatcgtctctagcattatatgaatcgtctt |
301 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || || |
|
|
| T |
42272567 |
tcttttatatttt-aatcaatgggatgaagacaattagtgtctcaatatcctatatcctatgaagaattgtgtcgtctctagcattatatgaattgtgtt |
42272665 |
T |
|
| Q |
302 |
tgcgtttggacttgatcatatt |
323 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
42272666 |
tgcgtttggacttgatcatatt |
42272687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 202 - 323
Target Start/End: Original strand, 42285601 - 42285721
Alignment:
| Q |
202 |
tcttttatatttttaatcaatgggatgaagacaattagtgtctcaatatcctatatcctatgaagaattgtatcgtctctagcattatatgaatcgtctt |
301 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || || |
|
|
| T |
42285601 |
tcttttatatttt-aatcaatgggatgaagacaattagtgtctcaatatcctatatcctatgaagaattgtgtcgtctctagcattatatgaattgtgtt |
42285699 |
T |
|
| Q |
302 |
tgcgtttggacttgatcatatt |
323 |
Q |
| |
|
||| |||||||||||||||||| |
|
|
| T |
42285700 |
tgcatttggacttgatcatatt |
42285721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 159 - 313
Target Start/End: Original strand, 42260347 - 42260507
Alignment:
| Q |
159 |
ttagtacctgaaaaaggataagaataaaaatagttagcaattttcttttatatttttaatcaatgggatgaagacaattagtgtctcaatatcctatatc |
258 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||| |||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
42260347 |
ttagtaccagaaaatggataagaataaaaataattaggaattttcttttatatttt-aatcaatggatcgaagacaattagtgtctcaatatcctatatc |
42260445 |
T |
|
| Q |
259 |
ctatgaagaattgtatcg-------tctctagcattatatgaatcgtctttgcgtttggact |
313 |
Q |
| |
|
||| |||||||||||||| ||||||||||||||||||| || |||||||||||||| |
|
|
| T |
42260446 |
ctaggaagaattgtatcgtttctactctctagcattatatgaatagtgtttgcgtttggact |
42260507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 42260220 - 42260289
Alignment:
| Q |
13 |
attctagtgatacaccaaatcaaaggcctaagagattgatcaagagacctagcagattcaatacttaaat |
82 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
42260220 |
attctagtgatacaccaaaacaaaggcccaagagattgatcaagagacctagcagattcaataattaaat |
42260289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 264 - 323
Target Start/End: Original strand, 42269481 - 42269539
Alignment:
| Q |
264 |
aagaattgtatcgtctctagcattatatgaatcgtctttgcgtttggacttgatcatatt |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||| | | ||||||||||||| |||||||||| |
|
|
| T |
42269481 |
aagaattgtatcgtctctagcattatatgacttgcgtttgcgtttggac-tgatcatatt |
42269539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 159 - 313
Target Start/End: Original strand, 489182 - 489342
Alignment:
| Q |
159 |
ttagtacctgaaaaaggataagaataaaaatagttagcaattttcttttatatttttaatcaatgggatgaagacaattagtgtctcaatatcctatatc |
258 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||| |||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
489182 |
ttagtaccagaaaatggataagaataaaaataattaggaattttcttttatatttt-aatcaatggatcgaagacaattagtgtctcaatatcctatatc |
489280 |
T |
|
| Q |
259 |
ctatgaagaattgtatcg-------tctctagcattatatgaatcgtctttgcgtttggact |
313 |
Q |
| |
|
||| |||||||||||||| ||||||||||||||||||| || |||||||||||||| |
|
|
| T |
489281 |
ctaggaagaattgtatcgtttctactctctagcattatatgaatagtgtttgcgtttggact |
489342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 489055 - 489124
Alignment:
| Q |
13 |
attctagtgatacaccaaatcaaaggcctaagagattgatcaagagacctagcagattcaatacttaaat |
82 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
489055 |
attctagtgatacaccaaaacaaaggcccaagagattgatcaagagacctagcagattcaataattaaat |
489124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University