View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7802_low_31 (Length: 306)
Name: NF7802_low_31
Description: NF7802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7802_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 16 - 298
Target Start/End: Complemental strand, 23289657 - 23289375
Alignment:
| Q |
16 |
cactaatgtcccctacacatagtttggagcatgagtatgaagattttgatgtacaatttcaagatgaagaggtatcgctatggaacttctgaacttgaag |
115 |
Q |
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| T |
23289657 |
cactaatgtcccctacacatagttttgagcatgagtatgaagattttgatgtacaatttcaagatgaagaggtatcgctatggaacttctgaacttgaag |
23289558 |
T |
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| Q |
116 |
tgtttggtttacnnnnnnnngtttggattgtaaaatggaaaatgtttgtactacaatttttgttagtggtatggattttaggtagagaaatgttttgttt |
215 |
Q |
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| T |
23289557 |
tgtttggtttacttttttttgtttggattgtaaaacggaaaatgtctgtactacaatttttgttagtggtatggattttaggtagagaaatgttttgttg |
23289458 |
T |
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| Q |
216 |
acacagtttaggacacaagtaccgtatgtttatacggattgagttttaaattgttttttctctatcatcaaatgtttcttctc |
298 |
Q |
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| T |
23289457 |
acacagtttaggacacaagtaccgtatgtttatacggattgagttttaaattgttttttctctatcatcaaatgtttgttctc |
23289375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 19 - 292
Target Start/End: Complemental strand, 23283314 - 23283037
Alignment:
| Q |
19 |
taatgtcccctacacatagtttggagcatgagtatgaagattttgatgtacaa---tttcaagatgaagaggtatcgctatggaacttctgaacttgaag |
115 |
Q |
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| T |
23283314 |
taatgtcccctacacatagtatggagcatgagtatgaaaattttgatttacaagactttcaagatgaagaggtatccctatggaacttctaaaattgaag |
23283215 |
T |
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| Q |
116 |
tgtttggtttacnnnnnnnngtttggattgtaaaatggaaaatgtttgtactacaatttttgttagtggtatggattttaggtagagaaatgttttgttt |
215 |
Q |
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| T |
23283214 |
agtttggttttgtttttttt-tttggattgtagaattgaaaatgtctatactacaatttttgttagtggtatggattttatgtagggaaatgttttgttt |
23283116 |
T |
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| Q |
216 |
acacagtttaggacacaagtaccgtatgtttatacgga--ttgagttttaaattgttttttctctatcatcaaatgttt |
292 |
Q |
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| T |
23283115 |
gcacagtttaggacacaggtaccgtatatttatacggattttgtgttttaaattgttttttctctatcttcaaatgttt |
23283037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 23257686 - 23257567
Alignment:
| Q |
16 |
cactaatgtcccctacacatagtttggag---catga---gtatgaagattttgatgtacaa---tttcaagatgaagaggtatcgctatggaacttctg |
106 |
Q |
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| T |
23257686 |
cactaatgtcccctacacatagctttgagtatcatgatcagtatgaagatattcatgtacaagactttcaagatgatgaggtatcactatggaacttcta |
23257587 |
T |
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| Q |
107 |
aacttgaagtgtttggttta |
126 |
Q |
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| T |
23257586 |
aacttaatgtgtttggttta |
23257567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 103
Target Start/End: Complemental strand, 23247293 - 23247205
Alignment:
| Q |
21 |
atgtcccctacacatagtttggag---catgagtatgaagattttgatgtacaa---tttcaagatgaagaggtatcgctatggaactt |
103 |
Q |
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||||| ||||||||||| || ||| ||||||||||| ||| || |||||||| ||||||||||| |||||||| ||||||||||| |
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| T |
23247293 |
atgtcacctacacatagctttgagtatcatgagtatgacgatattcatgtacaagattttcaagatgatgaggtatcactatggaactt |
23247205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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