View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7802_low_36 (Length: 295)
Name: NF7802_low_36
Description: NF7802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7802_low_36 |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 271
Target Start/End: Original strand, 21703757 - 21704017
Alignment:
| Q |
11 |
gagtagcagagatgcattgtgacaaaatcaactttagtctatttgaaaggacctttgaaataaacttgtacaaaacattacacagagaaattggacacca |
110 |
Q |
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| T |
21703757 |
gagtatcagagatgcattgtgacaaaatcaactttagtctatttgcaaggatctttgaaatcaacttgtacaaaacattacatagagaaattggacacca |
21703856 |
T |
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| Q |
111 |
atccttcattgttgtctgaatattttctttaggaataagagtggtgtctgtcatatatagatcagcgggaaactaacccgtatccaaccaacgataacat |
210 |
Q |
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| T |
21703857 |
atccttcattgttgtctgaatatttcctttaggaataagagcgatgtttgtcatatatagatcaacgggaaactgacccgtatccaaccaacgacaacat |
21703956 |
T |
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| Q |
211 |
tcagaaaaaatattatcgccacacaattcccaaaaatgctgatagaaaccggggttaaaac |
271 |
Q |
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| T |
21703957 |
tcagaaaaaatattatcgccacacaattcctaaaaatgctgatagaaaccggggttaaaac |
21704017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 119
Target Start/End: Original strand, 11606720 - 11606781
Alignment:
| Q |
58 |
aggacctttgaaataaacttgtacaaaacattacacagagaaattggacaccaatccttcat |
119 |
Q |
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| T |
11606720 |
aggacctttgaaataagcttatacaaaacattacatagcgcaattggtctccaatccttcat |
11606781 |
T |
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