View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7802_low_38 (Length: 288)
Name: NF7802_low_38
Description: NF7802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7802_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 39689178 - 39689029
Alignment:
| Q |
1 |
aaaggatttggtgagagtaaaaggaactaaatctaatggtaaaaaagtagaataatcaatcatggacaagcttaagtatggtctaggctaaatggcaccc |
100 |
Q |
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| T |
39689178 |
aaaggatttggtgagagtaaaaggaactaaatctaatggtaaaaaagtagaataatcaatcatggacaagtttaagtatggtctatgctaaatggcaccc |
39689079 |
T |
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| Q |
101 |
ttttagttaggaccgttaaaaccataggtattgttggaaaaatgccaaca |
150 |
Q |
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| T |
39689078 |
ttttagttaggaccattaaaaccataggtattgttggaaaaatgccaaca |
39689029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 148 - 270
Target Start/End: Complemental strand, 39688968 - 39688846
Alignment:
| Q |
148 |
acacatttcactttcacatttatctcaatggttacatattggtatcattgtgcaataattaatcaaagatatgttattatctatacaggtgaagaatgta |
247 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
39688968 |
acacatttcactttcacatttatctcaatggttacatattggtatcattgtgcaataattaatcaaagatatgttattatctacacaggtgaagaatgta |
39688869 |
T |
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| Q |
248 |
acactgttgttatcatagcatgg |
270 |
Q |
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| T |
39688868 |
acactgttgttatcatagcatgg |
39688846 |
T |
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