View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7802_low_39 (Length: 287)
Name: NF7802_low_39
Description: NF7802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7802_low_39 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 9927392 - 9927135
Alignment:
| Q |
18 |
agactcatgcttccaaagcaagaagaaaaagtcttaagacgtagaaaagatgaagctgaccttgagtcttccaagaagcattgtgacagcactgtaaaac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9927392 |
agactcatgcttccaaagcaagaagaaaaagtcttaagacgtagaaaagatgaagctgaccttgagtcttccaagaagcattgtgacagcactgtaaaac |
9927293 |
T |
|
| Q |
118 |
acatgaaagactgctaggaagaatatgaggatgtgtaactgatgcagtccattcacagataaaagtggttcatgtccctataaccagttaacttggataa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9927292 |
acatgaaagactgctaggaagaatatgaggatgtgtaactgatgcagtccattcacagataaaagtggttcatgtccctataaccagttaacttggataa |
9927193 |
T |
|
| Q |
218 |
gaagctactagaattgatgggaaataaaatgagaaattcagccagacactgtaattct |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
9927192 |
gaagctactagaattgatgggaaataaaatgagaaattaagccagacattgtaattct |
9927135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 76 - 197
Target Start/End: Original strand, 30921494 - 30921615
Alignment:
| Q |
76 |
accttgagtcttccaagaagcattgtgacagcactgtaaaacacatgaaagactgctaggaagaatatgaggatgtgtaactgatgcagtccattcacag |
175 |
Q |
| |
|
||||| ||||| || ||||||||||||||||||||||| | |||||||| ||| |||| ||| |||||||||||||||||||| || | |||||| |||| |
|
|
| T |
30921494 |
acctttagtctcccgagaagcattgtgacagcactgtatatcacatgaaggacggctaagaaaaatatgaggatgtgtaactggtgtaatccattgacag |
30921593 |
T |
|
| Q |
176 |
ataaaagtggttcatgtcccta |
197 |
Q |
| |
|
||| ||| || || |||||||| |
|
|
| T |
30921594 |
atataaggggctcttgtcccta |
30921615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University