View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7802_low_4 (Length: 545)
Name: NF7802_low_4
Description: NF7802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7802_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 16 - 476
Target Start/End: Complemental strand, 6416191 - 6415735
Alignment:
| Q |
16 |
caataacaagaaaacggcttcaactgttgtattggtttccaatatttctttattaatctcatcacatagatcaactgcacgccacacttcgatggagaaa |
115 |
Q |
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| T |
6416191 |
caataacaagaaaacggctttaactgctgtattggtttccaatatttctttattaatctcatcacatagatcaattgcacgccacacttcgatggagaaa |
6416092 |
T |
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| Q |
116 |
gaaaattcaaaaatcacatgtgcaagatcttcgtacttggaattgcaactaacatagttgatgggg-aatgaactcctttctcttttaagcgtactcttg |
214 |
Q |
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| T |
6416091 |
gaaaattcaaaaatcacatgtgcaagatcttcgtacttggaattgcaactaacatagttgatggggaaatgaactcctttct-ttttaagcgtactcttg |
6415993 |
T |
|
| Q |
215 |
tcgggaagtagccacgacacatgccactnnnnnnnnttaatcttgggagaaacctaaaattgtcatatacccgaccaataccccggtcgtctaacatggg |
314 |
Q |
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| T |
6415992 |
tcgggaagcagccacgacacatgccactaaaaaaaattaatcttgggagaaacctgaaattgtcatatatccgaccaataccccggtcgtctaacatggg |
6415893 |
T |
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| Q |
315 |
aggtgttgataaactcatcaacacatagctgataatcactcttaaaaaactaatttatttatatggatggtgggtaactcaaccgttttgagctagttgg |
414 |
Q |
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| T |
6415892 |
aggtgtcgataaactcatcaacacatagctgataatcactcttaaaaaactaatttatttatatggatggtgggtaactcaactgttttg----agttgg |
6415797 |
T |
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| Q |
415 |
agaccctagctttaaacccgaattaaaaataatctaacagctaattacaaccctttgtcatt |
476 |
Q |
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| T |
6415796 |
agaccctagctttaaacccgaattaaaaataatataacagctaattacaaccctttgtcatt |
6415735 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 171
Target Start/End: Complemental strand, 10518406 - 10518357
Alignment:
| Q |
122 |
tcaaaaatcacatgtgcaagatcttcgtacttggaattgcaactaacata |
171 |
Q |
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| T |
10518406 |
tcaaaaatcacatgtgcaagatcttcataagcggaatcgcaactaacata |
10518357 |
T |
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