View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7802_low_40 (Length: 273)
Name: NF7802_low_40
Description: NF7802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7802_low_40 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 20 - 273
Target Start/End: Original strand, 27102934 - 27103187
Alignment:
| Q |
20 |
ttctattccaacgttgccttcggtcccaacaacattgccacctttgccttcaatgccaacattgcctcaacctcaaggtaatgttcctccattgcctact |
119 |
Q |
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| T |
27102934 |
ttctattccaacgttgccttcagtcccaacaacattgccacctttgccttcaatgccaacattgcctcaacctcaaggtaatgttcctccattgcctacc |
27103033 |
T |
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| Q |
120 |
atcccttctatgcctaagctcactatgccaccacttcctagcattcctaccaatccaacacttccatctctcaactttccaccatttccatccaattcac |
219 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27103034 |
atcccttcagtgcctaagctcactatgccaccacttcctagcattccaaccaatccaacacttccatctctcaactttccaccatttccatccaattcac |
27103133 |
T |
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| Q |
220 |
ttcccaaccttccttcaatctcaaccattatctcctccatccctttcttctctc |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27103134 |
ttcccaaccttccttcaatctcaaccattatctcctccatccctttcttctctc |
27103187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 43 - 273
Target Start/End: Original strand, 27096654 - 27096884
Alignment:
| Q |
43 |
tcccaacaacattgccacctttgccttcaatgccaacattgcctcaacctcaaggtaatgttcctccattgcctactatcccttctatgcctaagctcac |
142 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27096654 |
tcccaacaacattgccacctttgccttcaatgccaacattgcctcaacctcaaggtaatgttcctccattgcctactatcccttctatgcctaagctcac |
27096753 |
T |
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| Q |
143 |
tatgccaccacttcctagcattcctaccaatccaacacttccatctctcaactttccaccatttccatccaattcacttcccaaccttccttcaatctca |
242 |
Q |
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| T |
27096754 |
tatgccaccacttcctagcattcctaccaatccaacacttccatctctcaactttccaccatttccatccaattcacttcccaacattccttcaatctca |
27096853 |
T |
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| Q |
243 |
accattatctcctccatccctttcttctctc |
273 |
Q |
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| T |
27096854 |
accattatctcctccatccctttcttctctc |
27096884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 27096607 - 27096661
Alignment:
| Q |
26 |
tccaacgttgccttcggtcccaacaacattgccacctttgccttcaatgccaaca |
80 |
Q |
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|||||| |||||||| | ||||||||||||||||||||||| ||||| |||||| |
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| T |
27096607 |
tccaacattgccttcaattccaacaacattgccacctttgccctcaatcccaaca |
27096661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 6e-40; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 90 - 271
Target Start/End: Original strand, 37189722 - 37189909
Alignment:
| Q |
90 |
cctcaaggtaatgttcctccattgcctactatcccttctatgcctaagctcactatgccaccacttcctagcattcctaccaa---tccaacacttccat |
186 |
Q |
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| T |
37189722 |
cctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacaattccat |
37189821 |
T |
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| Q |
187 |
ctctcaactttccaccatttccatc---caattcacttcccaaccttccttcaatctcaaccattatctcctccatccctttcttctc |
271 |
Q |
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|||||||| |||||||||| ||| | || ||||||||| ||||||||||||||| |||||| | || |||||||||| || ||||| |
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| T |
37189822 |
ctctcaacattccaccattgccagcagtcacttcacttccaaaccttccttcaatcccaaccactttcccctccatcccatttttctc |
37189909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 90 - 246
Target Start/End: Complemental strand, 37187815 - 37187653
Alignment:
| Q |
90 |
cctcaaggtaatgttcctccattgcctactatcccttctatgcctaagctcactatgccaccacttcctagcattcctaccaa---tccaacacttccat |
186 |
Q |
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||||| || ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| || ||||||| |||||| |
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| T |
37187815 |
cctcagggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttcctagctttcctacaaattttccaacaattccat |
37187716 |
T |
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| Q |
187 |
ctctcaactttccaccatttc---catccaattcacttcccaaccttccttcaatctcaacca |
246 |
Q |
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|||||||| |||||||||| | || ||| ||||||||||||| ||||||||||| |||||| |
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| T |
37187715 |
ctctcaacattccaccattgccagcagccacttcacttcccaacattccttcaatcccaacca |
37187653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 90 - 259
Target Start/End: Complemental strand, 37180132 - 37179957
Alignment:
| Q |
90 |
cctcaaggtaatgttcctccattgcctactatcccttctatgcctaagctcactatgccaccacttcctagcattcctaccaa---tccaacacttccat |
186 |
Q |
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|||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||| || ||||||| |||||| |
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| T |
37180132 |
cctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacaattccat |
37180033 |
T |
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| Q |
187 |
ctctcaactttccaccatttccatc---caattcacttcccaaccttccttcaatctcaaccattatctcctccat |
259 |
Q |
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|||||||| |||||||||| ||| | || ||||||||| ||||||||||||||| |||||| | || ||||||| |
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| T |
37180032 |
ctctcaacattccaccattgccagcagtcacttcacttccaaaccttccttcaatcccaaccactttcccctccat |
37179957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 90 - 246
Target Start/End: Original strand, 37181605 - 37181767
Alignment:
| Q |
90 |
cctcaaggtaatgttcctccattgcctactatcccttctatgcctaagctcactatgccaccacttcctagcattcctaccaa---tccaacacttccat |
186 |
Q |
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|||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||| || ||||||| |||||| |
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| T |
37181605 |
cctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaaatattccaacaattccat |
37181704 |
T |
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| Q |
187 |
ctctcaactttccaccatttccatc---caattcacttcccaaccttccttcaatctcaacca |
246 |
Q |
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|||||||| |||||||||| ||| | || ||||||||| ||||||||||||||| |||||| |
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| T |
37181705 |
ctctcaacattccaccattgccagcagtcacttcacttccaaaccttccttcaatcccaacca |
37181767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 174
Target Start/End: Complemental strand, 38704189 - 38704157
Alignment:
| Q |
142 |
ctatgccaccacttcctagcattcctaccaatc |
174 |
Q |
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|||||||||||||||||||| |||||||||||| |
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| T |
38704189 |
ctatgccaccacttcctagctttcctaccaatc |
38704157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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