View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7802_low_42 (Length: 262)
Name: NF7802_low_42
Description: NF7802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7802_low_42 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 7722851 - 7722613
Alignment:
| Q |
17 |
ggaacatgagagatgatcttcaaaagctggtggagaatatgtctgagatcaaggctgtggttttggatgcagaggagcagcagggaaccaacaaccatca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7722851 |
ggaacatgagagatgatcttcaaaagctggtggagaatatgtctgagatcaaggctgtggttttggatgcagaggagcagcagggaaccaacaaccatca |
7722752 |
T |
|
| Q |
117 |
agttcaactctggcttgaaaatctcaaagatgctcttgatgatgccgatgacgtgcttgatgactttaacactgaagacttgaggcgacaagtgatgacc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7722751 |
agttcaactctggcttgaaaatctcaaagatgctcttgatgatgccgatgacgtgcttgatgactttaacactgaagacttgaggcgacaagtgatgacc |
7722652 |
T |
|
| Q |
217 |
ggtaacaagaaggctaaaaagtttcgcatcttcttctca |
255 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
7722651 |
agtaacaagaaggctaaaaagttttgcatcttcttctca |
7722613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 255
Target Start/End: Original strand, 7481561 - 7481799
Alignment:
| Q |
17 |
ggaacatgagagatgatcttcaaaagctggtggagaatatgtctgagatcaaggctgtggttttggatgcagaggagcagcagggaaccaacaaccatca |
116 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7481561 |
ggaacatgagagatgatcttgacaagctggtggagaatatgtctgagatcaaggctgtggttttggatgcagaggagcagcagggaaccaacaaccatca |
7481660 |
T |
|
| Q |
117 |
agttcaactctggcttgaaaatctcaaagatgctcttgatgatgccgatgacgtgcttgatgactttaacactgaagacttgaggcgacaagtgatgacc |
216 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7481661 |
agttcaactctggctggaaaagctcaaagatgctcttgatgatgccgatgacttgctcgatgactttaacactgaagacttgaggcgacaagtcatgacc |
7481760 |
T |
|
| Q |
217 |
ggtaacaagaaggctaaaaagtttcgcatcttcttctca |
255 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7481761 |
agtaacaagaaggctaaaaagttttacatcttcttctca |
7481799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 7129577 - 7129339
Alignment:
| Q |
17 |
ggaacatgagagatgatcttcaaaagctggtggagaatatgtctgagatcaaggctgtggttttggatgcagaggagcagcagggaaccaacaaccatca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7129577 |
ggaacatgagagatgatcttcaaaagctggtggaaaatatgtctgagatcaaggctgtggttttggatgcagaggagcagcagggagccaacaaccatca |
7129478 |
T |
|
| Q |
117 |
agttcaactctggcttgaaaatctcaaagatgctcttgatgatgccgatgacgtgcttgatgactttaacactgaagacttgaggcgacaagtgatgacc |
216 |
Q |
| |
|
||||||||||||| | ||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
7129477 |
agttcaactctggttggaaaagctcaaggatgctcttgatgatgccgatgacttgcttgatgactttaacaccgaagacttgaggcgacaagtgatgacc |
7129378 |
T |
|
| Q |
217 |
ggtaacaagaaggctaaaaagtttcgcatcttcttctca |
255 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7129377 |
aatcacaagaaggctaaaaaggttcgcatcttcttctca |
7129339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 255
Target Start/End: Original strand, 7493963 - 7494201
Alignment:
| Q |
17 |
ggaacatgagagatgatcttcaaaagctggtggagaatatgtctgagatcaaggctgtggttttggatgcagaggagcagcagggaaccaacaaccatca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7493963 |
ggaacatgagagatgatcttcaaaagctggtggagaatatgtctgagatcaaggctgtggttttggatgcagaggagcagcaaggaaccaacaaccatca |
7494062 |
T |
|
| Q |
117 |
agttcaactctggcttgaaaatctcaaagatgctcttgatgatgccgatgacgtgcttgatgactttaacactgaagacttgaggcgacaagtgatgacc |
216 |
Q |
| |
|
||||||||| ||| | ||||| || ||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
7494063 |
agttcaactgtggttggaaaagctgaaagatgctcttgatgatgccgatgacttgctcgatgactttaacacggaagacttgaggcgacaggtgatgacc |
7494162 |
T |
|
| Q |
217 |
ggtaacaagaaggctaaaaagtttcgcatcttcttctca |
255 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7494163 |
agtaacaagaaggctaaaaagtttcacatcttcttctca |
7494201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 255
Target Start/End: Original strand, 7519630 - 7519868
Alignment:
| Q |
17 |
ggaacatgagagatgatcttcaaaagctggtggagaatatgtctgagatcaaggctgtggttttggatgcagaggagcagcagggaaccaacaaccatca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7519630 |
ggaacatgagagatgatcttcaaaagctggtggagaatatgtctgagatcaaggctgtggttttggatgcagaggagcagcaaggaaccaacaaccatca |
7519729 |
T |
|
| Q |
117 |
agttcaactctggcttgaaaatctcaaagatgctcttgatgatgccgatgacgtgcttgatgactttaacactgaagacttgaggcgacaagtgatgacc |
216 |
Q |
| |
|
||||||||| ||| | ||||| || |||||||||||||||||||||||| || ||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
7519730 |
agttcaactgtggttggaaaagctgaaagatgctcttgatgatgccgataacttgcttgatgacttcaacaccgaagacttgaggcgacaagtgatgacc |
7519829 |
T |
|
| Q |
217 |
ggtaacaagaaggctaaaaagtttcgcatcttcttctca |
255 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7519830 |
tgtaacaagaaggctaaaaagtttcacatcttcttctca |
7519868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 17 - 255
Target Start/End: Original strand, 7527680 - 7527918
Alignment:
| Q |
17 |
ggaacatgagagatgatcttcaaaagctggtggagaatatgtctgagatcaaggctgtggttttggatgcagaggagcagcagggaaccaacaaccatca |
116 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
7527680 |
ggaacatgagagatgatcttgacaagctggtggagaatatgtctgagatcaaggctgtggttttggatgcagaagagcagcagggcaccaacaaccatca |
7527779 |
T |
|
| Q |
117 |
agttcaactctggcttgaaaatctcaaagatgctcttgatgatgccgatgacgtgcttgatgactttaacactgaagacttgaggcgacaagtgatgacc |
216 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||| ||||||||||||||||| | || ||| |||| ||||| ||||| |||||||||||||||||||| |
|
|
| T |
7527780 |
agttcaactatggctggaaaatctcaaagatgcttttgatgatgccgatgactttctcgattacttcaacacggaagaactgaggcgacaagtgatgacc |
7527879 |
T |
|
| Q |
217 |
ggtaacaagaaggctaaaaagtttcgcatcttcttctca |
255 |
Q |
| |
|
| ||||||| ||||||||| | ||||||||||||||| |
|
|
| T |
7527880 |
aatcacaagaaagctaaaaaggtccgcatcttcttctca |
7527918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 7714557 - 7714326
Alignment:
| Q |
17 |
ggaacatgagagatgatcttcaaaagctggtggagaatatgtctgagatcaaggctgtggttttggatgcagaggagcagcagggaaccaacaaccatca |
116 |
Q |
| |
|
|||||||||||||||||||| | ||| ||||||| ||||||| |||||||||||||||| |||||||| ||||||||||| ||||||||||| | |
|
|
| T |
7714557 |
ggaacatgagagatgatcttgacaagatggtggataatatgtatgagatcaaggctgtgattttggat-------agcagcagggagccaacaaccatga |
7714465 |
T |
|
| Q |
117 |
agttcaactctggcttgaaaatctcaaagatgctcttgatgatgccgatgacgtgcttgatgactttaacactgaagacttgaggcgacaagtgatgacc |
216 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||| |||||||||||||| | || || |||| ||||| |||||| ||||| |||||||||||||| |
|
|
| T |
7714464 |
agttcaactatggctggaaaatctcaaagatgctctttatgatgccgatgactttctcaattacttcaacacggaagacctgaggtgacaagtgatgacc |
7714365 |
T |
|
| Q |
217 |
ggtaacaagaaggctaaaaagtttcgcatcttcttctca |
255 |
Q |
| |
|
| ||||||| ||||||||| || |||||||||||||| |
|
|
| T |
7714364 |
aatcacaagaaagctaaaaaggtttgcatcttcttctca |
7714326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 141 - 255
Target Start/End: Original strand, 7506351 - 7506465
Alignment:
| Q |
141 |
caaagatgctcttgatgatgccgatgacgtgcttgatgactttaacactgaagacttgaggcgacaagtgatgaccggtaacaagaaggctaaaaagttt |
240 |
Q |
| |
|
||||||||||||||||||||| |||||| |||| |||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7506351 |
caaagatgctcttgatgatgctgatgacttgctcgatgacttcaacaccgaagacttgaggcgacaagtgatgaccagtaacaagaaggctaaaaagttt |
7506450 |
T |
|
| Q |
241 |
cgcatcttcttctca |
255 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
7506451 |
cacatcttcttctca |
7506465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 7506271 - 7506352
Alignment:
| Q |
17 |
ggaacatgagagatgatcttcaaaagctggtggagaatatgtctgagatcaaggctgtggttttggatgcagaggagcagca |
98 |
Q |
| |
|
|||||||| |||| |||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7506271 |
ggaacatgtgagaagatcttgactagctggtggataatatgtctgagatcaaggctgtggttttggatgcagaggagcagca |
7506352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 58 - 251
Target Start/End: Complemental strand, 16750836 - 16750640
Alignment:
| Q |
58 |
tctgagatcaaggctgtggttttggatgcagaggagca---gcagggaaccaacaaccatcaagttcaactctggcttgaaaatctcaaagatgctcttg |
154 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| || || |||||| |||||||| || | || |||| ||| | || || ||||||||| |||||| |
|
|
| T |
16750836 |
tctgagatcaaggctgcggttttggatgcagaagaacaacagcagggccccaacaactatagaattaaactatgggtggagaagctcaaagatactcttg |
16750737 |
T |
|
| Q |
155 |
atgatgccgatgacgtgcttgatgactttaacactgaagacttgaggcgacaagtgatgaccggtaacaagaaggctaaaaagtttcgcatcttctt |
251 |
Q |
| |
|
||||||| |||||| |||||||||| || |||||||||||| ||| ||||| |||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
16750736 |
atgatgctgatgacttgcttgatgatgtttttactgaagacttgtagcgtcaagtactgacaaaagacaagaaggctaaaaaggttcgcatcttctt |
16750640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University