View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7802_low_47 (Length: 250)
Name: NF7802_low_47
Description: NF7802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7802_low_47 |
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Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 2139421 - 2139184
Alignment:
| Q |
1 |
cttgtatagctagtttctcataagagtatgtgttgcccttaatctatatactatgctattagaattggaccatacgttagatccatgatagaactcatgc |
100 |
Q |
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| T |
2139421 |
cttgtatagctagtttctcataagagtatgtgttgcccttaatctatatactatgctattagaattggaccatacattagatccatgatagaactcatgc |
2139322 |
T |
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| Q |
101 |
aatgtcctttgacaaaagctcctaacaatggttatatttcaatcaaggtatggcttagttaaagaggttgtgaccctctagttcaatttggttttaatgt |
200 |
Q |
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| T |
2139321 |
aatgtcctttgacaaaagctcctaacaatggttatatttcaatcaaggtatggcttagttaaagaggttgtgaccctctagttcaatttggttttaatgt |
2139222 |
T |
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| Q |
201 |
attcaatgttgatttaacacattttgcctttatatatt |
238 |
Q |
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| T |
2139221 |
attcaatgttgatttaacacattttgcctttatatatt |
2139184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 2144750 - 2144664
Alignment:
| Q |
11 |
tagtttctcataagagtatgtgttgcccttaatctatatactat--gctattagaattggaccatacgttagatccatgatagaact |
95 |
Q |
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| T |
2144750 |
tagtttctcacgagagtatgtgtagccacaaatctatatactatatgctattagaattggaccatacattagatccatgttagaact |
2144664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 2123348 - 2123292
Alignment:
| Q |
4 |
gtatagctagtttctcataagagtatgtgttgcccttaatctatatactatgctatt |
60 |
Q |
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| T |
2123348 |
gtatatctagtttctcataagagaatgtgatgccactaatctatatattatgctatt |
2123292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 194
Target Start/End: Complemental strand, 2144586 - 2144548
Alignment:
| Q |
156 |
tagttaaagaggttgtgaccctctagttcaatttggttt |
194 |
Q |
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| T |
2144586 |
tagttaaagaggttgtgatcatctagttcaatttggttt |
2144548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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