View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7802_low_48 (Length: 240)
Name: NF7802_low_48
Description: NF7802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7802_low_48 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 2139675 - 2139451
Alignment:
| Q |
18 |
atacattggtggccaccataagaaaaatgcatagaagaatggatttggaggccattttcttttatatata--gagcaatctgtgagtgttacttgaaaca |
115 |
Q |
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| T |
2139675 |
atacattggtggccaccataagaaaaatgcatagaagaatggatttggaggccattttcttttatatatatagagcaatctgtgagtgttacttgaaaca |
2139576 |
T |
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| Q |
116 |
aatattggaccttgtatatatagaggtcaagttgggtaggagnnnnnnntgttaggtaaattaaatcaataatgtaatgtacaaagtacaagaataaatt |
215 |
Q |
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| T |
2139575 |
aatattggaccttgtatatatagaggtcaagttgggtaggagaaaaaaatgttaggtaaattaaatcaataatgtaatgtacaaagtacaagaataaatt |
2139476 |
T |
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| Q |
216 |
gtttaggcgtatacaagttacacca |
240 |
Q |
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| T |
2139475 |
gtttaggcgtatacaagttacacca |
2139451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 208
Target Start/End: Complemental strand, 2123496 - 2123454
Alignment:
| Q |
166 |
gttaggtaaattaaatcaataatgtaatgtacaaagtacaaga |
208 |
Q |
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| T |
2123496 |
gttaggtgcattaaattaataatgtaatgtacaaagtacaaga |
2123454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 2145003 - 2144951
Alignment:
| Q |
26 |
gtggccaccataagaaaaatgcat---agaagaatggatttggaggccatttt |
75 |
Q |
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| T |
2145003 |
gtggccaccataagaaaaatgcctagaagaagaatggatttggaagccatttt |
2144951 |
T |
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