View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7802_low_5 (Length: 534)

Name: NF7802_low_5
Description: NF7802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7802_low_5
NF7802_low_5
[»] scaffold0090 (1 HSPs)
scaffold0090 (18-526)||(10154-10662)
[»] chr5 (5 HSPs)
chr5 (280-437)||(22692288-22692445)
chr5 (271-475)||(28426030-28426234)
chr5 (271-469)||(28417503-28417701)
chr5 (28-159)||(22692024-22692155)
chr5 (90-162)||(28426349-28426421)
[»] chr8 (2 HSPs)
chr8 (85-481)||(23551589-23551985)
chr8 (323-444)||(23357927-23358048)
[»] chr3 (4 HSPs)
chr3 (317-471)||(1046501-1046655)
chr3 (317-471)||(1103531-1103685)
chr3 (317-482)||(1086967-1087129)
chr3 (317-471)||(1071314-1071468)


Alignment Details
Target: scaffold0090 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 18 - 526
Target Start/End: Original strand, 10154 - 10662
Alignment:
Q  18 aaagtcactcgaagatggatcgtcccaatttttccatgcaacgagactcctattaagatcctttcttttgtcccatccagccttcattcctgataatatt 117  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10154 aaagtcactcgaagatggatcatcccaatttttccacgcaacgagactcctattaagatcctttcttttgtcccatccagccttcattcctgataatatt 10253  T
Q  118 gtatcacaaggataatcaaaactttgccacacaaaaatttcttcaccaccatttttaagtactaaatttccatcgtccaagagttgcgcaataggacttg 217  Q
    ||||||||||||||||||||||||||||||| ||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  10254 gtatcacaaggataatcaaaactttgccacaaaaaatgttcttcaccaccatttttcagtactaaatttccatcgtccaagagttgcgcaataggacttg 10353  T
Q  218 aaaccttttctattgtcgcgtttgttgaccatagtagggattgatttttatcaagaagtacaagatttccatcttgacttatgatcatcttgctagaagt 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||    
T  10354 aaaccttttctattgtcgcgtttgttgaccatagtagggattgatttttatcgagaagtacaagatttctatcttgacttatgatcaacttgctagaagt 10453  T
Q  318 gtctttgattggattgtcacggttggcaacccaaacaactcttctaaccgggatatttttgtaccaaattccaacatagcggttcgcggaactacccgga 417  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||    
T  10454 gtctttgattggattgtcacgattggcaacccaaacaactcttctaaccgggatatttttgtaccaaattccaacatagcggttcgtggaactacctgga 10553  T
Q  418 ttgaagaaacccaactcaaatactccacccttagaaaccaaggtgcttccatcaggaagtgattgtgtaattgtatcggctgcaaatgaaatttcggaga 517  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||    
T  10554 ttgaagaaacctaactcaaatactccacccttagaaaccaaggtgcttccatcaggaagtgattgtgtaattgtatcggttgcaaatgaaaatttggaga 10653  T
Q  518 agaataata 526  Q
    |||||||||    
T  10654 agaataata 10662  T

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Target: chr5 (Bit Score: 70; Significance: 3e-31; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 280 - 437
Target Start/End: Original strand, 22692288 - 22692445
Alignment:
Q  280 agatttccatcttgacttatgatcatcttgctagaagtgtctttgattggattgtcacggttggcaacccaaacaactcttctaaccgggatatttttgt 379  Q
    |||||||||||||| |||||| ||| |||||| ||   ||||||||| ||||| |||||||||  ||||||||| ||||||||||| || ||||||||||    
T  22692288 agatttccatcttggcttatggtcaacttgctggagtcgtctttgatcggattatcacggttgagaacccaaaccactcttctaactggaatatttttgt 22692387  T
Q  380 accaaattccaacatagcggttcgcggaactacccggattgaagaaacccaactcaaa 437  Q
    |||||| ||| ||||||||||| |  |||||||| ||| |||| ||||||||||||||    
T  22692388 accaaagtccgacatagcggtttgatgaactacctggactgaaaaaacccaactcaaa 22692445  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 271 - 475
Target Start/End: Complemental strand, 28426234 - 28426030
Alignment:
Q  271 agaagtacaagatttccatcttgacttatgatcatcttgctagaagtgtctttgattggattgtcacggttggcaacccaaacaactcttctaaccggga 370  Q
    ||||| ||||| ||||||||||||||||||||||  ||||| |||  ||||||  |||||||||  || || ||||||||||| ||||||| ||| ||||    
T  28426234 agaagcacaaggtttccatcttgacttatgatcaatttgcttgaatcgtcttttgttggattgtttcgatttgcaacccaaaccactcttcgaacgggga 28426135  T
Q  371 tatttttgtaccaaattccaacatagcggttcgcggaactacccggattgaagaaacccaactcaaatactccacccttagaaaccaaggtgcttccatc 470  Q
    ||||||||||||| ||||| |||||||||||   |||  |||| ||  |||||||||||| ||||||   |||| ||||||| ||||| ||||| |||||    
T  28426134 tatttttgtaccatattcctacatagcggtttaaggacttaccgggtctgaagaaacccatctcaaaggttccatccttagagaccaaagtgctgccatc 28426035  T
Q  471 aggaa 475  Q
    |||||    
T  28426034 aggaa 28426030  T

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Target: chr5; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 271 - 469
Target Start/End: Complemental strand, 28417701 - 28417503
Alignment:
Q  271 agaagtacaagatttccatcttgacttatgatcatcttgctagaagtgtctttgattggattgtcacggttggcaacccaaacaactcttctaaccggga 370  Q
    ||||| ||||| ||||||||||||||||||||||  ||||| |||  ||||||  |||||||||  || || ||||||||||| ||||||| ||| ||||    
T  28417701 agaagcacaaggtttccatcttgacttatgatcaatttgcttgaatcgtcttttgttggattgtttcgatttgcaacccaaaccactcttcgaacgggga 28417602  T
Q  371 tatttttgtaccaaattccaacatagcggttcgcggaactacccggattgaagaaacccaactcaaatactccacccttagaaaccaaggtgcttccat 469  Q
    ||||||||||||| ||||| |||||||||||   |||  |||| ||  |||||||||||| ||||||   |||| ||||||| ||||| ||||| ||||    
T  28417601 tatttttgtaccatattcctacatagcggtttaaggacttaccgggtctgaagaaacccatctcaaaggttccatccttagagaccaaagtgctgccat 28417503  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 28 - 159
Target Start/End: Original strand, 22692024 - 22692155
Alignment:
Q  28 gaagatggatcgtcccaatttttccatgcaacgagactcctattaagatcctttcttttgtcccatccagccttcattcctgataatattgtatcacaag 127  Q
    ||||||||||| ||||||||||||||||||  ||||  |||||||||| |  ||||||||||   ||||  ||||||||| | ||| |  |||||||| |    
T  22692024 gaagatggatcctcccaatttttccatgcagtgagatgcctattaagacctgttcttttgtcgattccaatcttcattcccggtaacaacgtatcacagg 22692123  T
Q  128 gataatcaaaactttgccacacaaaaatttct 159  Q
    |||| ||||| | |||||||| |||| |||||    
T  22692124 gatagtcaaagccttgccacaaaaaactttct 22692155  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 90 - 162
Target Start/End: Complemental strand, 28426421 - 28426349
Alignment:
Q  90 ccatccagccttcattcctgataatattgtatcacaaggataatcaaaactttgccacacaaaaatttcttca 162  Q
    |||||||  ||||||||| | ||||| ||||||||||||||  ||||| | |||||||| |||| ||||||||    
T  28426421 ccatccacacttcattccagctaatagtgtatcacaaggatggtcaaagccttgccacaaaaaactttcttca 28426349  T

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Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 85 - 481
Target Start/End: Complemental strand, 23551985 - 23551589
Alignment:
Q  85 ttgtcccatccagccttcattcctgataatattgtatcacaaggataatcaaaactttgccacacaaaaatttcttcaccac---catttttaagtacta 181  Q
    |||||||| |||  ||||||||||| ||||||||||| |  |||||||||||| ||||||||||  ||| | |||||| | |   ||| |||||||||||    
T  23551985 ttgtcccaaccaatcttcattcctgctaatattgtattatcaggataatcaaagctttgccacaagaaattctcttcatccctttcatctttaagtacta 23551886  T
Q  182 aatttccatcgtccaagagttgcgcaataggacttgaaaccttttctattgtcgcgtttgttgaccatagtagggattgatttttatcaagaagtacaag 281  Q
    ||||||||| ||| | ||||||||| || ||| | |||  | | |   ||||    ||||| |||||||| || || ||||| ||  | ||||  |||||    
T  23551885 aatttccattgtcgaggagttgcgcgatgggaatggaagtcatcttagttgta---tttgtcgaccatagaagagactgattgttgccgagaacaacaag 23551789  T
Q  282 atttccatcttgacttatgatcatcttgctagaagtgtctttgattggattgtcacggttggcaacccaaacaactcttctaaccgggatatttttgtac 381  Q
     ||||| ||||   |||| |||| |||||| ||  | ||||||  |||||| || || |||||||||||||| ||  |  |||||||||| |||||||||    
T  23551788 gtttccttcttcgtttattatcaacttgctggagttatctttgcatggattatcgcgattggcaacccaaactacagtcttaaccgggatgtttttgtac 23551689  T
Q  382 caaattccaacatagcggttcgcggaactacccggattgaagaaacccaactcaaatactccacccttagaaaccaaggtgcttccatcaggaagtgatt 481  Q
    |||||||| ||||||||||| | |||| |||| ||| |||||||||| || || ||   |||| | || |||| ||||||||||||||| | ||||||||    
T  23551688 caaattccgacatagcggtttggggaattacctggactgaagaaacctaattcgaaggttccatctttggaaatcaaggtgcttccatctgaaagtgatt 23551589  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 323 - 444
Target Start/End: Complemental strand, 23358048 - 23357927
Alignment:
Q  323 tgattggattgtcacggttggcaacccaaacaactcttctaaccgggatatttttgtaccaaattccaacatagcggttcgcggaactacccggattgaa 422  Q
    ||||||||||||| || || || |||||||||||| || | |  |||||| ||||| |||||||||| ||||||||||| | ||||||||| ||| ||||    
T  23358048 tgattggattgtcgcgatttgctacccaaacaactgtttttaaagggatagttttgaaccaaattcctacatagcggtttgtggaactaccaggactgaa 23357949  T
Q  423 gaaacccaactcaaatactcca 444  Q
    ||||||||  |||||| |||||    
T  23357948 gaaacccagttcaaatgctcca 23357927  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 317 - 471
Target Start/End: Complemental strand, 1046655 - 1046501
Alignment:
Q  317 tgtctttgattggattgtcacggttggcaacccaaacaactcttctaaccgggatatttttgtaccaaattccaacatagcggttcgcggaactacccgg 416  Q
    |||||||||||||||| |||||||| ||||||||||| | ||||||    ||||| ||||||||||| ||||| |||||||| || |  |||||||| ||    
T  1046655 tgtctttgattggattatcacggtttgcaacccaaactattcttctttttgggatgtttttgtaccatattcccacatagcgatttgttgaactacctgg 1046556  T
Q  417 attgaagaaacccaactcaaatactccacccttagaaaccaaggtgcttccatca 471  Q
      |||| || || ||||||||   |||  | ||||||||||||||| | ||||||    
T  1046555 tgtgaaaaagcctaactcaaaggttccgtcattagaaaccaaggtgttgccatca 1046501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 317 - 471
Target Start/End: Complemental strand, 1103685 - 1103531
Alignment:
Q  317 tgtctttgattggattgtcacggttggcaacccaaacaactcttctaaccgggatatttttgtaccaaattccaacatagcggttcgcggaactacccgg 416  Q
    |||||||||||||||| |||||||| ||||||||||| | ||||||    ||||||||||||||||| ||||| || ||||| || |  |||||||| ||    
T  1103685 tgtctttgattggattatcacggtttgcaacccaaactattcttctttttgggatatttttgtaccatattcccacgtagcgatttgttgaactacctgg 1103586  T
Q  417 attgaagaaacccaactcaaatactccacccttagaaaccaaggtgcttccatca 471  Q
      |||| || || ||||||||   |||| | ||||||||||| ||| | ||||||    
T  1103585 tgtgaaaaagcctaactcaaaggttccatcattagaaaccaaagtgttaccatca 1103531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 317 - 482
Target Start/End: Complemental strand, 1087129 - 1086967
Alignment:
Q  317 tgtctttgattggattgtcacggttggcaacccaaacaactcttctaaccgggatatttttgtaccaaattccaacatagcggttcgcggaactacccgg 416  Q
    |||||||||||||||  |||||||| ||||||||||| | |||  ||   || |||||||||||||| ||||| |||||||| || | ||||||||| ||    
T  1087129 tgtctttgattggatcatcacggtttgcaacccaaactattctatta---ggcatatttttgtaccatattcccacatagcgatttgtggaactacctgg 1087033  T
Q  417 attgaagaaacccaactcaaatactccacccttagaaaccaaggtgcttccatcaggaagtgattg 482  Q
      |||| || || ||||||||   |||| | ||||||||||| ||| | |||||| |||| |||||    
T  1087032 tgtgaaaaatcctaactcaaaggttccatcattagaaaccaaagtgttgccatcatgaagagattg 1086967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 471
Target Start/End: Complemental strand, 1071468 - 1071314
Alignment:
Q  317 tgtctttgattggattgtcacggttggcaacccaaacaactcttctaaccgggatatttttgtaccaaattccaacatagcggttcgcggaactacccgg 416  Q
    |||| ||||||||||  |||||||| ||||||||||| | ||||||    ||||||||||||||||| ||||| |||||||| || |  |||||||| ||    
T  1071468 tgtccttgattggatcatcacggtttgcaacccaaactattcttctttttgggatatttttgtaccatattcccacatagcgatttgttgaactacctgg 1071369  T
Q  417 attgaagaaacccaactcaaatactccacccttagaaaccaaggtgcttccatca 471  Q
      |||| || || ||||||||   |||| | ||||||||||| ||| | ||||||    
T  1071368 tgtgaaaaagcctaactcaaaggttccatcattagaaaccaaagtgttgccatca 1071314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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