View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7802_low_50 (Length: 220)

Name: NF7802_low_50
Description: NF7802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7802_low_50
NF7802_low_50
[»] chr7 (22 HSPs)
chr7 (20-208)||(1301771-1301959)
chr7 (20-195)||(8659670-8659845)
chr7 (20-192)||(13333145-13333317)
chr7 (25-208)||(8667731-8667914)
chr7 (22-202)||(8647186-8647366)
chr7 (22-201)||(8640226-8640406)
chr7 (40-192)||(10494063-10494215)
chr7 (20-195)||(8654757-8654932)
chr7 (20-196)||(8602281-8602457)
chr7 (20-196)||(7877418-7877594)
chr7 (20-208)||(8585379-8585567)
chr7 (20-191)||(17260548-17260719)
chr7 (121-199)||(27830557-27830635)
chr7 (31-202)||(8628850-8629021)
chr7 (25-176)||(8671335-8671486)
chr7 (20-191)||(17268246-17268417)
chr7 (20-158)||(8636066-8636204)
chr7 (22-61)||(29577489-29577528)
chr7 (25-76)||(29581646-29581697)
chr7 (20-202)||(6789819-6790001)
chr7 (20-80)||(8382677-8382737)
chr7 (20-196)||(8590945-8591121)
[»] chr1 (3 HSPs)
chr1 (20-195)||(4678244-4678419)
chr1 (20-202)||(15595348-15595528)
chr1 (37-193)||(34466481-34466637)
[»] chr2 (9 HSPs)
chr2 (20-158)||(16657240-16657378)
chr2 (26-202)||(43625725-43625902)
chr2 (20-195)||(11999701-11999876)
chr2 (25-151)||(12245136-12245262)
chr2 (20-151)||(7542533-7542664)
chr2 (20-151)||(12234996-12235127)
chr2 (20-195)||(16661678-16661853)
chr2 (20-151)||(14703715-14703846)
chr2 (26-191)||(12258271-12258436)
[»] chr4 (3 HSPs)
chr4 (25-208)||(9335564-9335747)
chr4 (20-86)||(35132755-35132821)
chr4 (46-95)||(54396756-54396805)
[»] chr5 (1 HSPs)
chr5 (25-195)||(28220263-28220433)
[»] chr8 (1 HSPs)
chr8 (34-208)||(43745168-43745342)


Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 20 - 208
Target Start/End: Original strand, 1301771 - 1301959
Alignment:
Q  20 caccggcatctatggtggcttttcgctgagaatcattgaaatgtgcaggcacagtaacaacagcatttgtcactggtgacattagatatgtctctgcaat 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1301771 caccggcatctatggtggcttttcgctgagaatcattgaaatgtgcaggcacagtaacaacagcatttgtcactggtgacattagatatgtctctgcaat 1301870  T
Q  120 ttctcgcatcttcgtaaggaccatagatgatatttcctccacgcaaaagtgcttctcctgacccttgtacttaacaacaatcacaggtt 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1301871 ttctcgcatcttcgtaaggaccatagatgatatttcctccacgcaaaagtgcttctcctgacccttgtacttaacaacaatcacgggtt 1301959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 8659670 - 8659845
Alignment:
Q  20 caccggcatctatggtggcttttcgctgagaatcattgaaatgtgcaggcacagtaacaacagcatttgtcactggtgacattagatatgtctctgcaat 119  Q
    |||||| ||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||  |||| |||||||||||||||||||||||||     
T  8659670 caccggaatctatggtggcttttcgctgagaatcattgaactatgcaggcactgtaacaacagcattcttcacaggtgacattagatatgtctctgcaac 8659769  T
Q  120 ttctcgcatcttcgtaaggaccatagatgatatttcctccacgcaaaagtgcttctcctgacccttgtacttaaca 195  Q
    ||||||||| || ||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||    
T  8659770 ttctcgcatttttgtaagtaccatagatgatatttcctccgcacaaaagtgcttctcctgacccttgtactgaaca 8659845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 13333317 - 13333145
Alignment:
Q  20 caccggcatctatggtggcttttcgctgagaatcattgaaatgtgcaggcacagtaacaacagcatttgtcactggtgacattagatatgtctctgcaat 119  Q
    |||| |||||||||||||| |||||||||||||||||||| |  || |||||||||||||| |||||  | |||||||||   | ||||| ||||||||     
T  13333317 caccagcatctatggtggcctttcgctgagaatcattgaagtaagccggcacagtaacaacggcattcttgactggtgaccccatatatgcctctgcaac 13333218  T
Q  120 ttctcgcatcttcgtaaggaccatagatgatatttcctccacgcaaaagtgcttctcctgacccttgtactta 192  Q
     ||||||||||| ||||||||||||||||||||||||||  | |||||||||||||| ||||||||| |||||    
T  13333217 ctctcgcatctttgtaaggaccatagatgatatttcctcggcacaaaagtgcttctcttgacccttgcactta 13333145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 25 - 208
Target Start/End: Original strand, 8667731 - 8667914
Alignment:
Q  25 gcatctatggtggcttttcgctgagaatcattgaaatgtgcaggcacagtaacaacagcatttgtcactggtgacattagatatgtctctgcaatttctc 124  Q
    |||||||||||||| |||||||||||||||||||| |  || |||||||||||||| |||||  | || || |||   ||||||| ||| ||||  ||||    
T  8667731 gcatctatggtggcctttcgctgagaatcattgaagtaagctggcacagtaacaacggcattcttgaccggcgaccccagatatgcctccgcaacctctc 8667830  T
Q  125 gcatcttcgtaaggaccatagatgatatttcctccacgcaaaagtgcttctcctgacccttgtacttaacaacaatcacaggtt 208  Q
    ||||||| ||||| |||||||| |||||||||||  | |||||||||||||| ||||||||||||||||||  ||||| |||||    
T  8667831 gcatctttgtaagcaccatagaagatatttcctcagcacaaaagtgcttctcttgacccttgtacttaacagtaatcataggtt 8667914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 22 - 202
Target Start/End: Original strand, 8647186 - 8647366
Alignment:
Q  22 ccggcatctatggtggcttttcgctgagaatcattgaaatgtgcaggcacagtaacaacagcatttgtcactggtgacattagatatgtctctgcaattt 121  Q
    ||||||||||| ||||||||||||||| |||||||||| | |||||||||||||||||| |||||  | || || ||||||| |||| |||||||||  |    
T  8647186 ccggcatctatagtggcttttcgctgataatcattgaagtatgcaggcacagtaacaactgcattctttacaggggacattaaatatttctctgcaacct 8647285  T
Q  122 ctcgcatcttcgtaaggaccatagatgatatttcctccacgcaaaagtgcttctcctgacccttgtacttaacaacaatca 202  Q
    |||||||||| || |||| ||| ||||||||||||||  | ||| |  ||||||| | ||||||||| ||||||| |||||    
T  8647286 ctcgcatctttgtgaggatcatcgatgatatttcctcagcacaataacgcttctcttcacccttgtatttaacaataatca 8647366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 201
Target Start/End: Complemental strand, 8640406 - 8640226
Alignment:
Q  22 ccggcatctatggtggcttttcgctgagaatcattgaaatgtgcaggcacagtaacaacagcatttgtcactggtg-acattagatatgtctctgcaatt 120  Q
    ||||||||||||||||||||| ||||| |||||||||| |  ||||||| ||||||||| |||||  | || || | |||||| |||| |||||||||      
T  8640406 ccggcatctatggtggctttttgctgataatcattgaagtaagcaggcatagtaacaactgcattctttacggggggacattaaatatttctctgcaacc 8640307  T
Q  121 tctcgcatcttcgtaaggaccatagatgatatttcctccacgcaaaagtgcttctcctgacccttgtacttaacaacaatc 201  Q
    ||||||||||||| ||||| ||||||||||||||||||  | |||||  ||||||| | ||||||||| ||||||| ||||    
T  8640306 tctcgcatcttcgaaaggatcatagatgatatttcctcggcacaaaaacgcttctcttcacccttgtatttaacaataatc 8640226  T

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Target: chr7; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 40 - 192
Target Start/End: Complemental strand, 10494215 - 10494063
Alignment:
Q  40 tttcgctgagaatcattgaaatgtgcaggcacagtaacaacagcatttgtcactggtgacattagatatgtctctgcaatttctcgcatcttcgtaagga 139  Q
    ||||| |||||||| ||||| |  || ||||||||||||||||||||  | |||||||||   | ||||| ||||||||  |||||||||||  ||||||    
T  10494215 tttcgttgagaatcgttgaagtaagccggcacagtaacaacagcattcttgactggtgaccccaaatatgcctctgcaacctctcgcatctttataagga 10494116  T
Q  140 ccatagatgatatttcctccacgcaaaagtgcttctcctgacccttgtactta 192  Q
    |||||||||||||||||||  | |||||||||||||| |||||||||||||||    
T  10494115 ccatagatgatatttcctcggcacaaaagtgcttctcttgacccttgtactta 10494063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 8654757 - 8654932
Alignment:
Q  20 caccggcatctatggtggcttttcgctgagaatcattgaaatgtgcaggcacagtaacaacagcatttgtcactggtgacattagatatgtctctgcaat 119  Q
    |||| ||||||||||| |||||||||||||| |||||||| | ||| ||||||||||||||  ||||| | || |||||    || |||| |||||||||    
T  8654757 caccagcatctatggttgcttttcgctgagagtcattgaagtatgccggcacagtaacaacgacatttttgacgggtgatccaaggtatgcctctgcaat 8654856  T
Q  120 ttctcgcatcttcgtaaggaccatagatgatatttcctccacgcaaaagtgcttctcctgacccttgtacttaaca 195  Q
     ||||||||||| ||||| |||  |||||||||||||||  | ||||| |||||||| ||||| ||||||||||||    
T  8654857 ctctcgcatctttgtaagaaccgcagatgatatttcctcagcacaaaattgcttctcttgacctttgtacttaaca 8654932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 8602281 - 8602457
Alignment:
Q  20 caccggcatctatggtggcttttcgctgagaatcattgaaatgtgcaggcacagtaacaacagcatttgtcactggtgacattagatatgtctctgcaat 119  Q
    |||| |||||| | ||||||||||||||||||||||| ||||  || |||||||||||||| |||||  | || ||||||   ||| |  ||||||||||    
T  8602281 caccagcatcttttgtggcttttcgctgagaatcattaaaataagccggcacagtaacaactgcattcttgacaggtgactccagaaacttctctgcaat 8602380  T
Q  120 ttctcgcatcttcgtaaggaccatagatgatatttcctccacgcaaaagtgcttctcctgacccttgtacttaacaa 196  Q
    ||| |||||||| ||||||||||| ||||| ||||||||  | || |||||||| |||  |||||| ||||||||||    
T  8602381 ttcacgcatctttgtaaggaccattgatgagatttcctcagcacagaagtgcttttccccacccttatacttaacaa 8602457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 20 - 196
Target Start/End: Complemental strand, 7877594 - 7877418
Alignment:
Q  20 caccggcatctatggtggcttttcgctgagaatcattgaaatgtgcaggcacagtaacaacagcatttgtcactggtgacattagatatgtctctgcaat 119  Q
    |||| |||||| | ||||||||||| ||||||||||||||||  || |||||||||||||| |||||  | || ||||||   | | |  ||||||||||    
T  7877594 caccagcatcttttgtggcttttcgttgagaatcattgaaataagccggcacagtaacaactgcattcttgacaggtgactccaaaaacttctctgcaat 7877495  T
Q  120 ttctcgcatcttcgtaaggaccatagatgatatttcctccacgcaaaagtgcttctcctgacccttgtacttaacaa 196  Q
     || |||||||| ||||||| ||| ||||||||||||||  | ||||||||||| ||||  ||||| ||||||||||    
T  7877494 ctcgcgcatctttgtaaggatcatggatgatatttcctcggcacaaaagtgcttttcctcgcccttatacttaacaa 7877418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 20 - 208
Target Start/End: Complemental strand, 8585567 - 8585379
Alignment:
Q  20 caccggcatctatggtggcttttcgctgagaatcattgaaatgtgcaggcacagtaacaacagcatttgtcactggtgacattagatatgtctctgcaat 119  Q
    |||| ||||| |||||||||||||||||||||||||||||||  ||||||||||| ||||| ||||||   || |||||  | | |||||||||||||||    
T  8585567 caccagcatccatggtggcttttcgctgagaatcattgaaataagcaggcacagtcacaactgcattttgaacaggtgatttcaaatatgtctctgcaat 8585468  T
Q  120 -ttctcgcatcttcgtaaggaccatagatgatatttcctccacgcaaaagtgcttctcctgacccttgtacttaacaacaatcacaggtt 208  Q
     ||||  ||| || || ||||  |||||||||||||||||  | || | || ||| || ||||||||||||||||||  ||||| |||||    
T  8585467 cttct-tcatgtttgtgaggatgatagatgatatttcctcagcacataggttcttttcttgacccttgtacttaacagtaatcataggtt 8585379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 191
Target Start/End: Original strand, 17260548 - 17260719
Alignment:
Q  20 caccggcatctatggtggcttttcgctgagaatcattgaaatgtgcaggcacagtaacaacagcatttgtcactggtgacattagatatgtctctgcaat 119  Q
    |||| |||||||||||||||||||||||||||||||||||||  ||||| ||||||| |||| ||||  | || | |||    ||||||  ||| |||||    
T  17260548 caccagcatctatggtggcttttcgctgagaatcattgaaataagcaggaacagtaataacaacattaataaccgatgattcaagatatacctcagcaat 17260647  T
Q  120 ttctcgcatcttcgtaaggaccatagatgatatttcctccacgcaaaagtgcttctcctgacccttgtactt 191  Q
     || |||||||||  ||| |||||||| || ||||||||  | |||||||| |||||| | |||||||||||    
T  17260648 ctcccgcatcttcacaagtaccatagacgagatttcctctgcacaaaagtgtttctcccgtcccttgtactt 17260719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 121 - 199
Target Start/End: Complemental strand, 27830635 - 27830557
Alignment:
Q  121 tctcgcatcttcgtaaggaccatagatgatatttcctccacgcaaaagtgcttctcctgacccttgtacttaacaacaa 199  Q
    ||||||||||| ||||||||||| ||||| ||||||||| | || ||||| |||||||||| |||||||||||||||||    
T  27830635 tctcgcatctttgtaaggaccattgatgaaatttcctccgcacataagtgtttctcctgactcttgtacttaacaacaa 27830557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 31 - 202
Target Start/End: Original strand, 8628850 - 8629021
Alignment:
Q  31 atggtggcttttcgctgagaatcattgaaatgtgcaggcacagtaacaacagcatttgtcactggtgacattagatatgtctctgcaat-ttctcgcatc 129  Q
    |||||||||||||||||||||||||||||||  |||||||| || ||||| |||||| | || |||||  | | ||| | ||||||||| ||||  |||     
T  8628850 atggtggcttttcgctgagaatcattgaaataagcaggcacggtgacaactgcattttttacaggtgatttcaaataagcctctgcaatcttct-tcata 8628948  T
Q  130 ttcgtaaggaccatagatgatatttcctccacgcaaaagtgcttctcctgacccttgtacttaacaacaatca 202  Q
    || | |||||  |||||||||||||||||  | || | || |||||| |||||||||||||||||| ||||||    
T  8628949 tttgcaaggataatagatgatatttcctcagcacataggttcttctcttgacccttgtacttaacagcaatca 8629021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 25 - 176
Target Start/End: Complemental strand, 8671486 - 8671335
Alignment:
Q  25 gcatctatggtggcttttcgctgagaatcattgaaatgtgcaggcacagtaacaacagcatttgtcactggtgacattagatatgtctctgcaatttctc 124  Q
    ||||| ||||||||  ||||||||||||||||||| |  || ||||| |||||||| |||||  | || ||||||   ||||||| ||| ||||  ||||    
T  8671486 gcatcaatggtggccgttcgctgagaatcattgaagtaagctggcacggtaacaacggcattcttgaccggtgactccagatatgcctccgcaacctctc 8671387  T
Q  125 gcatcttcgtaaggaccatagatgatatttcctccacgcaaaagtgcttctc 176  Q
    ||||||| ||||| |||||||| |||||||||||  | ||||| ||||||||    
T  8671386 gcatctttgtaagcaccatagaagatatttcctcagcacaaaattgcttctc 8671335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 20 - 191
Target Start/End: Original strand, 17268246 - 17268417
Alignment:
Q  20 caccggcatctatggtggcttttcgctgagaatcattgaaatgtgcaggcacagtaacaacagcatttgtcactggtgacattagatatgtctctgcaat 119  Q
    |||| ||||||||||||||||||||||||||||| ||||| |  || || |||||||  ||||||||  | || | |||   |||||||  ||| |||||    
T  17268246 caccagcatctatggtggcttttcgctgagaatcgttgaagtaagccgggacagtaatgacagcattcataaccgatgattctagatattcctcagcaat 17268345  T
Q  120 ttctcgcatcttcgtaaggaccatagatgatatttcctccacgcaaaagtgcttctcctgacccttgtactt 191  Q
     || |||||||| || || |||||||| || ||||||||  | |||||||| |||||| | |||||||||||    
T  17268346 ctcccgcatctttgtgagtaccatagacgaaatttcctctgcacaaaagtgtttctcccgtcccttgtactt 17268417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 158
Target Start/End: Complemental strand, 8636204 - 8636066
Alignment:
Q  20 caccggcatctatggtggcttttcgctgagaatcattgaaatgtgcaggcacagtaacaacagcatttgtcactggtgacattagatatgtctctgcaat 119  Q
    |||| |||||| |||||| ||| |||||||||||||||||||  || ||||||||||  || |||||  | || | |||    ||||||| ||| |||||    
T  8636204 caccagcatctttggtggatttacgctgagaatcattgaaataagcgggcacagtaatgactgcattcttgacagatgattccagatatgcctcagcaat 8636105  T
Q  120 ttctcgcatcttcgtaaggaccatagatgatatttcctc 158  Q
     ||||||||||| || ||||||||||| |||||||||||    
T  8636104 ctctcgcatctttgtcaggaccatagacgatatttcctc 8636066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 29577528 - 29577489
Alignment:
Q  22 ccggcatctatggtggcttttcgctgagaatcattgaaat 61  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  29577528 ccggcatctttggtggcttttcgctgagaatcattgaaat 29577489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 29581697 - 29581646
Alignment:
Q  25 gcatctatggtggcttttcgctgagaatcattgaaatgtgcaggcacagtaa 76  Q
    |||||| ||||||||||||||||||||||||||||||  |||||||| ||||    
T  29581697 gcatctttggtggcttttcgctgagaatcattgaaataagcaggcacggtaa 29581646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 6789819 - 6790001
Alignment:
Q  20 caccggcatctatggtggcttttcgctgagaatcattgaaatgtgcaggcacagtaacaacagcatttgtcactggtgacattagatatgtctctgcaat 119  Q
    |||| |||||||  |||||||| || ||||||||||||||||  ||||||||||||| ||| |||||| | |    ||||   | |||| |||| |||||    
T  6789819 caccagcatctaaagtggctttccgttgagaatcattgaaataagcaggcacagtaataactgcattttttatctctgactgcaaatatttctcagcaat 6789918  T
Q  120 ttctcgcatcttcgtaaggaccatagatgatatttcctccacgcaaaagtgcttctcctgacccttgtacttaacaacaatca 202  Q
     || |||||||| || |||| |||||| || | |||||| || || |  |||||||||| |||||| |||| |||||||||||    
T  6789919 ctcccgcatcttggtgaggatcatagacgaaacttcctcaacacatagttgcttctcctcacccttatactcaacaacaatca 6790001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 8382737 - 8382677
Alignment:
Q  20 caccggcatctatggtggcttttcgctgagaatcattgaaatgtgcaggcacagtaacaac 80  Q
    |||| |||||| | |||||||| || |||||||||||||||| ||||||||| ||||||||    
T  8382737 caccagcatcttttgtggctttccgttgagaatcattgaaatatgcaggcacggtaacaac 8382677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 8590945 - 8591121
Alignment:
Q  20 caccggcatctatggtggcttttcgctgagaatcattgaaatgtgcaggcacagtaacaacagcatttgtcactggtgacattagatatgtctctgcaat 119  Q
    |||| |||||| |||| ||||| | |||||||||||| ||||  || |||||||||||||| |||||  | || ||||||   | | |  | || |||||    
T  8590945 caccagcatctttggtagctttcctctgagaatcattaaaataagctggcacagtaacaactgcattcttgacaggtgactccaaaaacttttcagcaat 8591044  T
Q  120 ttctcgcatcttcgtaaggaccatagatgatatttcctccacgcaaaagtgcttctcctgacccttgtacttaacaa 196  Q
     ||||||||||| || || ||||| ||||| ||||||||| | ||||   |||| |||| |||||||||||||||||    
T  8591045 ctctcgcatctttgtgagaaccatggatgagatttcctccgcacaaagacgcttttcctcacccttgtacttaacaa 8591121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 195
Target Start/End: Complemental strand, 4678419 - 4678244
Alignment:
Q  20 caccggcatctatggtggcttttcgctgagaatcattgaaatgtgcaggcacagtaacaacagcatttgtcactggtgacattagatatgtctctgcaat 119  Q
    |||| ||||||||||| |||||||| |||||||||||||| | ||||||||||||||||||  ||||  |||| |  ||  |||||||||| || ||||     
T  4678419 caccagcatctatggtagcttttcgttgagaatcattgaagtatgcaggcacagtaacaacgacattcttcacagacgaagttagatatgtttcggcaac 4678320  T
Q  120 ttctcgcatcttcgtaaggaccatagatgatatttcctccacgcaaaagtgcttctcctgacccttgtacttaaca 195  Q
    ||||| |||||| ||||||| ||| |||||||||||||| || | ||  |||||||| ||||||||||||||||||    
T  4678319 ttctctcatctttgtaaggatcatcgatgatatttcctcaacactaacttgcttctcttgacccttgtacttaaca 4678244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 15595348 - 15595528
Alignment:
Q  20 caccggcatctatggtggcttttcgctgagaatcattgaaatgtgcaggcacagtaacaacagcatttgtcactggtgacattagatatgtctctgcaat 119  Q
    |||| |||||||| ||||||||||| ||||||||||||| ||  |||||||| |||||||| |||||  | || || |||  || | || |||||||||     
T  15595348 cacctgcatctatagtggcttttcgttgagaatcattgagataagcaggcacggtaacaactgcattgtttacgggagac--taaaaatttctctgcaac 15595445  T
Q  120 ttctcgcatcttcgtaaggaccatagatgatatttcctccacgcaaaagtgcttctcctgacccttgtacttaacaacaatca 202  Q
     |||||||||||  | || | |||||| |||||||||||  | |||||| |||| || ||||||||||| ||||||| |||||    
T  15595446 ctctcgcatctttttgagaatcatagacgatatttcctcagcacaaaagcgcttttcttgacccttgtatttaacaataatca 15595528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 193
Target Start/End: Complemental strand, 34466637 - 34466481
Alignment:
Q  37 gcttttcgctgagaatcattgaaatgtgcaggcacagtaacaacagcatttgtcactggtgacattagatatgtctctgcaatttctcgcatcttcgtaa 136  Q
    |||||||||||||||||||| ||||  |||||||| || | ||| |||||  | | ||||||    | ||||  ||||||| | || |||||||| | ||    
T  34466637 gcttttcgctgagaatcattaaaataagcaggcacggtgataactgcattcttaattggtgattccaaatattcctctgcagtatcccgcatctttgaaa 34466538  T
Q  137 ggaccatagatgatatttcctccacgcaaaagtgcttctcctgacccttgtacttaa 193  Q
    ||| ||||||||| ||||||||  | || | |||||||||||||||||| |||||||    
T  34466537 ggatcatagatgagatttcctcagcacataggtgcttctcctgacccttatacttaa 34466481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 9e-23; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 20 - 158
Target Start/End: Complemental strand, 16657378 - 16657240
Alignment:
Q  20 caccggcatctatggtggcttttcgctgagaatcattgaaatgtgcaggcacagtaacaacagcatttgtcactggtgacattagatatgtctctgcaat 119  Q
    |||| ||||||||||||||||||||||| ||||||||||| |  || ||||||||||||||||||||  | || || |||   | | ||| ||| ||||     
T  16657378 caccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcacagtaacaacagcattcttgacaggcgactccataaatgcctcagcaac 16657279  T
Q  120 ttctcgcatcttcgtaaggaccatagatgatatttcctc 158  Q
    |||||||||||| ||||||| ||||||||||||||||||    
T  16657278 ttctcgcatctttgtaaggatcatagatgatatttcctc 16657240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 202
Target Start/End: Original strand, 43625725 - 43625902
Alignment:
Q  26 catctatggtggcttttcgctgagaatcattgaaatgtgcaggcacagtaacaacagcatttgtcac-tggtgacattagatatgtctctgcaatttctc 124  Q
    |||||||||||||||||||||||||||||||||| |  |||||||| |||||||| |||||  | ||  || ||||||| | || |||||||||  ||||    
T  43625725 catctatggtggcttttcgctgagaatcattgaagtaagcaggcacggtaacaactgcattctttacggggggacattaaaaatttctctgcaacctctc 43625824  T
Q  125 gcatcttcgtaaggaccatagatgatatttcctccacgcaaaagtgcttctcctgacccttgtacttaacaacaatca 202  Q
    ||||||| || |||| |||||| |||||||||||    |||||  ||||||| ||||||||||| || |||| |||||    
T  43625825 gcatctttgtgaggatcatagacgatatttcctcaggacaaaaacgcttctcttgacccttgtattttacaataatca 43625902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 20 - 195
Target Start/End: Original strand, 11999701 - 11999876
Alignment:
Q  20 caccggcatctatggtggcttttcgctgagaatcattgaaatgtgcaggcacagtaacaacagcatttgtcactggtgacattagatatgtctctgcaat 119  Q
    ||||||||||||| ||||||||||| ||||||||| | ||||  || || |||||||||||| ||||  | || |||||   || ||||| ||| |||||    
T  11999701 caccggcatctatagtggcttttcgttgagaatcactaaaataagctggtacagtaacaacaacattctttaccggtgattctaaatatgcctcagcaat 11999800  T
Q  120 ttctcgcatcttcgtaaggaccatagatgatatttcctccacgcaaaagtgcttctcctgacccttgtacttaaca 195  Q
    ||||||||||||||| || ||||||||||||| ||| ||  | || |  ||||||||||| || ||||||||||||    
T  11999801 ttctcgcatcttcgttagtaccatagatgatacttcttcagcacatagctgcttctcctggcctttgtacttaaca 11999876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 25 - 151
Target Start/End: Complemental strand, 12245262 - 12245136
Alignment:
Q  25 gcatctatggtggcttttcgctgagaatcattgaaatgtgcaggcacagtaacaacagcatttgtcactggtgacattagatatgtctctgcaatttctc 124  Q
    |||||||| || |||||||||||||||||| | ||||  ||||| |||||||||||||||||  | || |||||   || ||||| ||| ||||||||||    
T  12245262 gcatctatcgttgcttttcgctgagaatcactaaaataagcaggtacagtaacaacagcattctttaccggtgattctaaatatgcctcagcaatttctc 12245163  T
Q  125 gcatcttcgtaaggaccatagatgata 151  Q
    ||||||| || || |||||||||||||    
T  12245162 gcatctttgttagtaccatagatgata 12245136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 151
Target Start/End: Original strand, 7542533 - 7542664
Alignment:
Q  20 caccggcatctatggtggcttttcgctgagaatcattgaaatgtgcaggcacagtaacaacagcatttgtcactggtgacattagatatgtctctgcaat 119  Q
    |||| |||||||| ||||||||||| ||||||||||| ||||  ||||| ||||||||||| ||||| ||||| | ||    || ||| | ||| |||||    
T  7542533 cacccgcatctatagtggcttttcgttgagaatcattaaaataagcaggtacagtaacaactgcattcgtcacagttgtttctaaatacgactcagcaat 7542632  T
Q  120 ttctcgcatcttcgtaaggaccatagatgata 151  Q
    |||||||||||| || || |||||||||||||    
T  7542633 ttctcgcatctttgtgagtaccatagatgata 7542664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 20 - 151
Target Start/End: Original strand, 12234996 - 12235127
Alignment:
Q  20 caccggcatctatggtggcttttcgctgagaatcattgaaatgtgcaggcacagtaacaacagcatttgtcactggtgacattagatatgtctctgcaat 119  Q
    |||| |||||||| || |||||||| ||||||||||||||||  |||||||| |||||||| |||||  | |||||  |   || ||||| ||| || ||    
T  12234996 caccagcatctatagttgcttttcgttgagaatcattgaaataagcaggcacggtaacaactgcattcttaactggaaattgtaaatatgcctcagcgat 12235095  T
Q  120 ttctcgcatcttcgtaaggaccatagatgata 151  Q
    |||||||||||| || || |||||||||||||    
T  12235096 ttctcgcatctttgtgagtaccatagatgata 12235127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 20 - 195
Target Start/End: Complemental strand, 16661853 - 16661678
Alignment:
Q  20 caccggcatctatggtggcttttcgctgagaatcattgaaatgtgcaggcacagtaacaacagcatttgtcactggtgacattagatatgtctctgcaat 119  Q
    |||| ||||| ||||||||||||||||||||||| || ||||  ||||| ||||| ||||| |||||| | || |||||    | ||| | ||||||||     
T  16661853 caccagcatccatggtggcttttcgctgagaatcgttaaaataagcaggaacagtgacaactgcatttttaaccggtgattccaaataagcctctgcaac 16661754  T
Q  120 ttctcgcatcttcgtaaggaccatagatgatatttcctccacgcaaaagtgcttctcctgacccttgtacttaaca 195  Q
     ||   ||| || || ||||| |||||||| ||||||||  | |||| | ||||||||||||||||||||||||||    
T  16661753 ctccttcatgtttgtgaggacaatagatgagatttcctcggcacaaaggagcttctcctgacccttgtacttaaca 16661678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 151
Target Start/End: Original strand, 14703715 - 14703846
Alignment:
Q  20 caccggcatctatggtggcttttcgctgagaatcattgaaatgtgcaggcacagtaacaacagcatttgtcactggtgacattagatatgtctctgcaat 119  Q
    |||| ||||| || ||||||||||  ||||||||| | ||||  |||||||| |||||||| |||||  | || | ||||  || ||||||||| |||||    
T  14703715 caccagcatccatagtggcttttctttgagaatcactaaaataagcaggcaccgtaacaactgcattcttaacagttgactctaaatatgtctcagcaat 14703814  T
Q  120 ttctcgcatcttcgtaaggaccatagatgata 151  Q
    |||||||||||||   || |||||||||||||    
T  14703815 ttctcgcatcttcaccagtaccatagatgata 14703846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 191
Target Start/End: Complemental strand, 12258436 - 12258271
Alignment:
Q  26 catctatggtggcttttcgctgagaatcattgaaatgtgcaggcacagtaacaacagcatttgtcactggtgacattagatatgtctctgcaatttctcg 125  Q
    ||||||| |||||||| |  || |||||| | |||| |||||||||||||||||| |||||  | || |||||   || ||||| ||| |||||||||||    
T  12258436 catctatagtggctttcctttgtgaatcactaaaatatgcaggcacagtaacaactgcattcttaacgggtgattctaaatatgcctcagcaatttctcg 12258337  T
Q  126 catcttcgtaaggaccatagatgatatttcctccacgcaaaagtgcttctcctgacccttgtactt 191  Q
    |||||| || |  |||| |||||||| ||||||  | ||||  |||||||| |||  |||||||||    
T  12258336 catctttgtcaataccacagatgatacttcctcggcacaaagctgcttctcttgattcttgtactt 12258271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 25 - 208
Target Start/End: Complemental strand, 9335747 - 9335564
Alignment:
Q  25 gcatctatggtggcttttcgctgagaatcattgaaatgtgcaggcacagtaacaacagcatttgtcactggtgacattagatatgtctctgcaatttctc 124  Q
    |||||||||||||| |||||||||||||||||||| |  || ||||| |||||||| |||||  | || || |||   | ||||| ||| ||||  ||||    
T  9335747 gcatctatggtggcctttcgctgagaatcattgaagtaagctggcacggtaacaacggcattcttgaccggcgaccccaaatatgcctccgcaacctctc 9335648  T
Q  125 gcatcttcgtaaggaccatagatgatatttcctccacgcaaaagtgcttctcctgacccttgtacttaacaacaatcacaggtt 208  Q
     |||||| ||||| | |||||| |||||||||||  | |||||||||||||| ||||||||||| ||||||  ||||| |||||    
T  9335647 tcatctttgtaagcaacatagaagatatttcctcagcacaaaagtgcttctcttgacccttgtagttaacagtaatcataggtt 9335564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 35132755 - 35132821
Alignment:
Q  20 caccggcatctatggtggcttttcgctgagaatcattgaaatgtgcaggcacagtaacaacagcatt 86  Q
    |||| |||||||| ||||||||||| ||||||||| | ||||  ||||||||||||||||| |||||    
T  35132755 caccagcatctatagtggcttttcgttgagaatcactaaaataagcaggcacagtaacaactgcatt 35132821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 54396756 - 54396805
Alignment:
Q  46 tgagaatcattgaaatgtgcaggcacagtaacaacagcatttgtcactgg 95  Q
    ||||||||||||||||  ||||| |||||||||||||||||  |||||||    
T  54396756 tgagaatcattgaaataagcaggaacagtaacaacagcattcttcactgg 54396805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 195
Target Start/End: Original strand, 28220263 - 28220433
Alignment:
Q  25 gcatctatggtggcttttcgctgagaatcattgaaatgtgcaggcacagtaacaacagcatttgtcactggtgacattagatatgtctctgcaatttctc 124  Q
    ||||||||||||||||| |||||| ||||||||||||  ||||||||||||| ||| |||||  | || ||  |    | | | | ||||||||| || |    
T  28220263 gcatctatggtggctttccgctgataatcattgaaataagcaggcacagtaataactgcattcttgacaggaaattccaaaaaggcctctgcaatctcac 28220362  T
Q  125 gcatcttcgtaaggaccatagatgatatttcctccacgcaaaagtgcttctcctgacccttgtacttaaca 195  Q
    ||||||| || || ||||||||||| ||||| ||  | || | |||||||||||| |||||||||||||||    
T  28220363 gcatctttgttagaaccatagatgagatttcttcggcacataggtgcttctcctgtcccttgtacttaaca 28220433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 208
Target Start/End: Original strand, 43745168 - 43745342
Alignment:
Q  34 gtggcttttcgctgagaatcattgaaatgtgcaggcacagtaacaacagcatttgtcactggtgacattagatatgtctctgcaatttctcgcatcttcg 133  Q
    |||||||| |||||| ||||||||||||  || |||||||||||||| |||||  | || ||  |    | | ||||||||||||| || |||||||| |    
T  43745168 gtggctttccgctgataatcattgaaataagccggcacagtaacaactgcattcttgacaggcaattgcaaaaatgtctctgcaatctcacgcatctttg 43745267  T
Q  134 taaggaccatagatgatatttcctccacgcaaaagtgcttctcctgacccttgtacttaacaacaatcacaggtt 208  Q
    | || | ||||||||| ||||| ||  | || | |||||||||||| |||||||||||||||  |||||| ||||    
T  43745268 ttagaatcatagatgagatttcttcggcacataggtgcttctcctgtcccttgtacttaacagaaatcacgggtt 43745342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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