View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7802_low_52 (Length: 216)
Name: NF7802_low_52
Description: NF7802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7802_low_52 |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 6700597 - 6700385
Alignment:
| Q |
1 |
caagccctccttttgagccaattcctcacattatcttaaatcttaaaactccaaatagcaatgtactacatgtttggactgatggtgagcttggcagaat |
100 |
Q |
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| T |
6700597 |
caagccctccttttgagccaattcctcacattatcttaaatcttaaaactccaaatagcaatgtactacatgtttggactgatggtgaacttggcagaat |
6700498 |
T |
|
| Q |
101 |
cacggcgccgttgtgattctgccaaattcaccgtcaaa-caaacatacaaatagtaagttagtaacattgaatcctctttaaaggaactgagcaattaac |
199 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
6700497 |
cacggcgccgttgtgattctgccaaattcaccgtcaaaccaaacatacaaatagtaagttagtaacattgaatactctttaaaggaaatgagcaattaac |
6700398 |
T |
|
| Q |
200 |
aaaacaagacaaa |
212 |
Q |
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||||||||||||| |
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| T |
6700397 |
aaaacaagacaaa |
6700385 |
T |
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