View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7802_low_53 (Length: 210)

Name: NF7802_low_53
Description: NF7802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7802_low_53
NF7802_low_53
[»] chr4 (6 HSPs)
chr4 (61-188)||(21688060-21688187)
chr4 (71-149)||(28145289-28145367)
chr4 (94-159)||(24274888-24274953)
chr4 (70-134)||(38260919-38260983)
chr4 (61-142)||(6102919-6103000)
chr4 (94-147)||(35774471-35774524)
[»] chr5 (4 HSPs)
chr5 (61-159)||(35147878-35147976)
chr5 (85-159)||(31653220-31653295)
chr5 (88-150)||(35892210-35892272)
chr5 (71-159)||(1816443-1816531)
[»] chr1 (9 HSPs)
chr1 (61-160)||(12029785-12029884)
chr1 (73-147)||(26173661-26173735)
chr1 (89-149)||(1056378-1056438)
chr1 (86-159)||(35388696-35388769)
chr1 (70-159)||(44560099-44560187)
chr1 (80-159)||(12667604-12667683)
chr1 (100-159)||(35549429-35549488)
chr1 (80-149)||(27086557-27086625)
chr1 (111-159)||(38889203-38889251)
[»] chr7 (4 HSPs)
chr7 (97-159)||(8063093-8063155)
chr7 (61-159)||(15582275-15582373)
chr7 (80-146)||(1275775-1275841)
chr7 (87-158)||(691971-692042)
[»] chr6 (4 HSPs)
chr6 (61-159)||(13419298-13419396)
chr6 (88-159)||(33344353-33344424)
chr6 (88-159)||(35122468-35122539)
chr6 (94-159)||(2805340-2805405)
[»] chr3 (5 HSPs)
chr3 (89-159)||(52633396-52633466)
chr3 (71-147)||(24110078-24110154)
chr3 (91-159)||(24183378-24183446)
chr3 (87-159)||(37813098-37813169)
chr3 (71-143)||(53783426-53783498)
[»] chr8 (3 HSPs)
chr8 (70-159)||(40038393-40038482)
chr8 (85-159)||(23762250-23762324)
chr8 (86-159)||(27490347-27490420)
[»] scaffold0031 (1 HSPs)
scaffold0031 (85-160)||(106383-106458)
[»] chr2 (5 HSPs)
chr2 (61-159)||(6944765-6944863)
chr2 (86-136)||(32454802-32454852)
chr2 (70-141)||(4421645-4421719)
chr2 (82-158)||(33227954-33228030)
chr2 (94-159)||(1904697-1904762)
[»] scaffold0007 (1 HSPs)
scaffold0007 (80-157)||(243968-244045)


Alignment Details
Target: chr4 (Bit Score: 112; Significance: 8e-57; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 61 - 188
Target Start/End: Complemental strand, 21688187 - 21688060
Alignment:
Q  61 gatcacttccatatgcatttatatgcttctttgttggtgaagatttttggtttaaaggagcatatccctaacatttatttccaacatgtgtttagagagt 160  Q
    |||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21688187 gatcactctcatatgcatgtatatgcttctttgttggtgaagatttttggtttaaaggagcatatccctaacatttatttccaacatgtgtttagagagt 21688088  T
Q  161 acatctcttgtaaggattttttgaccaa 188  Q
    |||||||||||| |||||||||||||||    
T  21688087 acatctcttgtacggattttttgaccaa 21688060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 149
Target Start/End: Complemental strand, 28145367 - 28145289
Alignment:
Q  71 atatgcatttatatgcttctttgttggtgaagatttttggtttaaaggagcatatccctaacatttatttccaacatgt 149  Q
    |||||||| ||||  ||| ||||| || |||||||||||| |||||||||||||| |||||||||| ||||||||||||    
T  28145367 atatgcatgtatacacttttttgtcggcgaagatttttggattaaaggagcatattcctaacatttctttccaacatgt 28145289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 94 - 159
Target Start/End: Complemental strand, 24274953 - 24274888
Alignment:
Q  94 ttggtgaagatttttggtttaaaggagcatatccctaacatttatttccaacatgtgtttagagag 159  Q
    ||||||||||||||||| |||||||||||||| | |||||||| ||||||||||||| || |||||    
T  24274953 ttggtgaagatttttgggttaaaggagcatattcgtaacatttctttccaacatgtgcttcgagag 24274888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 134
Target Start/End: Complemental strand, 38260983 - 38260919
Alignment:
Q  70 catatgcatttatatgcttctttgttggtgaagatttttggtttaaaggagcatatccctaacat 134  Q
    ||||||||| |||| |||||||||||  |||||||||| || ||||||||||||||  |||||||    
T  38260983 catatgcatgtatacgcttctttgttattgaagattttcgggttaaaggagcatatttctaacat 38260919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 142
Target Start/End: Original strand, 6102919 - 6103000
Alignment:
Q  61 gatcacttccatatgcatttatatgcttctttgttggtgaagatttttggtttaaaggagcatatccctaacatttatttcc 142  Q
    |||||||  |||||||||  |||  |||||||||||||||| || |||||||  |||||||||||  ||||||||| |||||    
T  6102919 gatcactcgcatatgcatgcatacacttctttgttggtgaaaatctttggttcgaaggagcatatttctaacatttctttcc 6103000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 147
Target Start/End: Complemental strand, 35774524 - 35774471
Alignment:
Q  94 ttggtgaagatttttggtttaaaggagcatatccctaacatttatttccaacat 147  Q
    ||||||||||| |||| |||||| ||||||||  ||||||||| ||||||||||    
T  35774524 ttggtgaagatctttgatttaaatgagcatattgctaacatttctttccaacat 35774471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 3e-25; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 61 - 159
Target Start/End: Complemental strand, 35147976 - 35147878
Alignment:
Q  61 gatcacttccatatgcatttatatgcttctttgttggtgaagatttttggtttaaaggagcatatccctaacatttatttccaacatgtgtttagagag 159  Q
    |||||||  ||||||||| |||||||||||||||| || || |||||||||||||| |||||||| |||||||||||||||||||||||| ||| ||||    
T  35147976 gatcactcacatatgcatgtatatgcttctttgttagtaaacatttttggtttaaatgagcatattcctaacatttatttccaacatgtgcttaaagag 35147878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 31653295 - 31653220
Alignment:
Q  85 gcttctttgttggtgaagatttttggtttaaaggagcatat-ccctaacatttatttccaacatgtgtttagagag 159  Q
    |||| ||||||||||||||||||| ||||||| ||||||||  |||||||||| ||||||||||||| ||||||||    
T  31653295 gcttttttgttggtgaagatttttagtttaaatgagcatatatcctaacatttctttccaacatgtgcttagagag 31653220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 88 - 150
Target Start/End: Complemental strand, 35892272 - 35892210
Alignment:
Q  88 tctttgttggtgaagatttttggtttaaaggagcatatccctaacatttatttccaacatgtg 150  Q
    ||||||||||||| ||||||||| |||||||||||||| | |||||||| |||||||||||||    
T  35892272 tctttgttggtgatgatttttgggttaaaggagcatattcgtaacatttctttccaacatgtg 35892210  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 159
Target Start/End: Original strand, 1816443 - 1816531
Alignment:
Q  71 atatgcatttatatgcttctttgttggtgaagatttttggtttaaaggagcatatccctaacatttatttccaacatgtgtttagagag 159  Q
    ||||||||  ||| |||||||||||| ||||||| ||| |||||||| |||| || |||||||||| |||  || ||||| ||||||||    
T  1816443 atatgcatgcatacgcttctttgttgatgaagatctttagtttaaagtagcacattcctaacatttctttttaaaatgtgcttagagag 1816531  T

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Target: chr1 (Bit Score: 52; Significance: 5e-21; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 61 - 160
Target Start/End: Complemental strand, 12029884 - 12029785
Alignment:
Q  61 gatcacttccatatgcatttatatgcttctttgttggtgaagatttttggtttaaaggagcatatccctaacatttatttccaacatgtgtttagagagt 160  Q
    |||||||  ||||| ||| |||| |||| ||||||||| ||||||||||| |||||| ||||||| |||||||||||||||||||||||| || ||||||    
T  12029884 gatcactctcatatacatatatacgcttatttgttggtaaagatttttgggttaaagaagcatattcctaacatttatttccaacatgtgcttcgagagt 12029785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 73 - 147
Target Start/End: Original strand, 26173661 - 26173735
Alignment:
Q  73 atgcatttatatgcttctttgttggtgaagatttttggtttaaaggagcatatccctaacatttatttccaacat 147  Q
    |||||| |||| |||||||||||||| ||||||||||| ||||| |||||||| |||||||||| ||||||||||    
T  26173661 atgcatgtatacgcttctttgttggtaaagatttttgggttaaatgagcatattcctaacatttctttccaacat 26173735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 89 - 149
Target Start/End: Complemental strand, 1056438 - 1056378
Alignment:
Q  89 ctttgttggtgaagatttttggtttaaaggagcatatccctaacatttatttccaacatgt 149  Q
    |||||||||||||||||||||||| ||| ||| |||| |||||||||||||||||||||||    
T  1056438 ctttgttggtgaagatttttggttcaaaagagaatattcctaacatttatttccaacatgt 1056378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 86 - 159
Target Start/End: Complemental strand, 35388769 - 35388696
Alignment:
Q  86 cttctttgttggtgaagatttttggtttaaaggagcatatccctaacatttatttccaacatgtgtttagagag 159  Q
    ||||||||||||| ||||| ||| ||||||| | | |||| |||||||||| ||||||||||||||||||||||    
T  35388769 cttctttgttggtaaagatctttagtttaaaagtgtatattcctaacatttctttccaacatgtgtttagagag 35388696  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 70 - 159
Target Start/End: Original strand, 44560099 - 44560187
Alignment:
Q  70 catatgcatttatatgcttctttgttggtgaagatttttggtttaaaggagcatatccctaacatttatttccaacatgtgtttagagag 159  Q
    |||||||||| |||||||||||||||||||||  ||||||| ||||| | |||||| |||||||||| |||| |||||||| || |||||    
T  44560099 catatgcatt-atatgcttctttgttggtgaatttttttgggttaaaagcgcatattcctaacatttctttcaaacatgtgcttcgagag 44560187  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 80 - 159
Target Start/End: Complemental strand, 12667683 - 12667604
Alignment:
Q  80 tatatgcttctttgttggtgaagatttttggtttaaaggagcatatccctaacatttatttccaacatgtgtttagagag 159  Q
    ||||||||||||| ||| | ||||||||||||| ||| || || || |||||||||| |||||||||  | |||||||||    
T  12667683 tatatgcttctttattgatcaagatttttggttcaaatgatcagattcctaacatttctttccaacacatatttagagag 12667604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 159
Target Start/End: Complemental strand, 35549488 - 35549429
Alignment:
Q  100 aagatttttggtttaaaggagcatatccctaacatttatttccaacatgtgtttagagag 159  Q
    |||||||||||||||||  ||||||| |||||| ||| |||  |||||||||||||||||    
T  35549488 aagatttttggtttaaaaaagcatattcctaacttttttttttaacatgtgtttagagag 35549429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 149
Target Start/End: Original strand, 27086557 - 27086625
Alignment:
Q  80 tatatgcttctttgttggtgaagatttttggtttaaaggagcatatccctaacatttatttccaacatgt 149  Q
    |||| |||| |||||||||||| |||||||| ||||| |||||||| | ||| |||| ||||||||||||    
T  27086557 tatacgcttttttgttggtgaacatttttggattaaa-gagcatattcataatatttctttccaacatgt 27086625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 38889251 - 38889203
Alignment:
Q  111 tttaaaggagcatatccctaacatttatttccaacatgtgtttagagag 159  Q
    ||||||||||| ||| |||||||||| ||| |||||| |||||||||||    
T  38889251 tttaaaggagcttattcctaacatttcttttcaacatatgtttagagag 38889203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 8063093 - 8063155
Alignment:
Q  97 gtgaagatttttggtttaaaggagcatatccctaacatttatttccaacatgtgtttagagag 159  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||    
T  8063093 gtgaagatttttggtttaaaggagcatattcctaacatttctttccaacatgtgcttagagag 8063155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 61 - 159
Target Start/End: Original strand, 15582275 - 15582373
Alignment:
Q  61 gatcacttccatatgcatttatatgcttctttgttggtgaagatttttggtttaaaggagcatatccctaacatttatttccaacatgtgtttagagag 159  Q
    |||||||  ||||||||| | ||||| ||||||||||||||||||||||| ||||||||||||||   |||||||| | ||||||||||| || |||||    
T  15582275 gatcactctcatatgcatgtgtatgcctctttgttggtgaagatttttgggttaaaggagcatatttgtaacatttctctccaacatgtgcttcgagag 15582373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 146
Target Start/End: Original strand, 1275775 - 1275841
Alignment:
Q  80 tatatgcttctttgttggtgaagatttttggtttaaaggagcatatccctaacatttatttccaaca 146  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||  ||||| ||| |||||||||    
T  1275775 tatatgtttctttgttggtgaagatttttgggttaaaggagcatatttctaacgtttttttccaaca 1275841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 158
Target Start/End: Complemental strand, 692042 - 691971
Alignment:
Q  87 ttctttgttggtgaagatttttggtttaaaggagcatatccctaacatttatttccaacatgtgtttagaga 158  Q
    ||||||||||||| |||||||| ||||||| |||||||| | |||||||| ||| ||||||||  |||||||    
T  692042 ttctttgttggtggagattttttgtttaaaagagcatattcttaacatttgttttcaacatgtacttagaga 691971  T

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Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 61 - 159
Target Start/End: Complemental strand, 13419396 - 13419298
Alignment:
Q  61 gatcacttccatatgcatttatatgcttctttgttggtgaagatttttggtttaaaggagcatatccctaacatttatttccaacatgtgtttagagag 159  Q
    |||||||  ||||||||| |||||| |||||||||||||||||||||||| |||||||||||||| || ||||| | |||| |||||||| || |||||    
T  13419396 gatcactctcatatgcatgtatatgtttctttgttggtgaagatttttgggttaaaggagcatattcccaacatctctttcgaacatgtgcttcgagag 13419298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 88 - 159
Target Start/End: Complemental strand, 33344424 - 33344353
Alignment:
Q  88 tctttgttggtgaagatttttggtttaaaggagcatatccctaacatttatttccaacatgtgtttagagag 159  Q
    ||||||||||||||||||||||| ||||||||| |||| | |||||||| |||| |||||||| || |||||    
T  33344424 tctttgttggtgaagatttttgggttaaaggagtatattcgtaacatttctttctaacatgtgcttcgagag 33344353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 88 - 159
Target Start/End: Original strand, 35122468 - 35122539
Alignment:
Q  88 tctttgttggtgaagatttttggtttaaaggagcatatccctaacatttatttccaacatgtgtttagagag 159  Q
    ||||||||||||||||||||||| ||||||||| |||| | |||||||| |||| |||||||| || |||||    
T  35122468 tctttgttggtgaagatttttgggttaaaggagtatattcgtaacatttctttctaacatgtgcttcgagag 35122539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 159
Target Start/End: Original strand, 2805340 - 2805405
Alignment:
Q  94 ttggtgaagatttttggtttaaaggagcatatccctaacatttatttccaacatgtgtttagagag 159  Q
    ||||||||||||||||||||||||||| ||||  ||||||||| |||||| |||||  ||||||||    
T  2805340 ttggtgaagatttttggtttaaaggagtatattgctaacatttctttccatcatgttcttagagag 2805405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 89 - 159
Target Start/End: Complemental strand, 52633466 - 52633396
Alignment:
Q  89 ctttgttggtgaagatttttggtttaaaggagcatatccctaacatttatttccaacatgtgtttagagag 159  Q
    ||||||||||||| |||||||||||||| ||||||||||| ||| ||| ||||||||||||||||||||||    
T  52633466 ctttgttggtgaatatttttggtttaaatgagcatatcccaaacttttttttccaacatgtgtttagagag 52633396  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 147
Target Start/End: Complemental strand, 24110154 - 24110078
Alignment:
Q  71 atatgcatttatatgcttctttgttggtgaagatttttggtttaaaggagcatatccctaacatttatttccaacat 147  Q
    |||||||| |||  |||||||| ||| ||||||||||||| |||||||| |||||  ||||||||| ||||||||||    
T  24110154 atatgcatatatgcgcttctttattgatgaagatttttggattaaaggaacatatttctaacatttctttccaacat 24110078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 24183446 - 24183378
Alignment:
Q  91 ttgttggtgaagatttttggtttaaaggagcatatccctaacatttatttccaacatgtgtttagagag 159  Q
    ||||||||||||| ||||| |||||||||||| |  |||||||||| |||||| ||| || ||||||||    
T  24183446 ttgttggtgaagaattttgctttaaaggagcacaatcctaacatttctttccatcatatgcttagagag 24183378  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 159
Target Start/End: Original strand, 37813098 - 37813169
Alignment:
Q  87 ttctttgttggtgaagatttttggtttaaaggagcatatccctaacatttatttccaacatgtgtttagagag 159  Q
    |||||||||||||||  ||||||||||||| |||  ||| ||| |||||| ||||||| ||||| ||||||||    
T  37813098 ttctttgttggtgaatttttttggtttaaaagagtgtattcctgacatttctttccaa-atgtgcttagagag 37813169  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 143
Target Start/End: Complemental strand, 53783498 - 53783426
Alignment:
Q  71 atatgcatttatatgcttctttgttggtgaagatttttggtttaaaggagcatatccctaacatttatttcca 143  Q
    |||||||| ||| ||||||||||||||||||  ||||   ||||||  |||||||  ||||||||||||||||    
T  53783498 atatgcatgtatgtgcttctttgttggtgaattttttatatttaaattagcatatttctaacatttatttcca 53783426  T

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Target: chr8 (Bit Score: 50; Significance: 8e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 70 - 159
Target Start/End: Complemental strand, 40038482 - 40038393
Alignment:
Q  70 catatgcatttatatgcttctttgttggtgaagatttttggtttaaaggagcatatccctaacatttatttccaacatgtgtttagagag 159  Q
    |||||||||  ||| | |||||||||||||||||| ||||||||||||||| |||| | |||||||| ||||||||||||| ||||||||    
T  40038482 catatgcatggatacgtttctttgttggtgaagatctttggtttaaaggagaatattcttaacatttctttccaacatgtgcttagagag 40038393  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 23762250 - 23762324
Alignment:
Q  85 gcttctttgttggtgaagatttttggtttaaaggagcatatccctaacatttatttccaacatgtgtttagagag 159  Q
    |||||||||||||||||||||||| |||||||||||||||| | |||||||| |||  | |||||| ||||||||    
T  23762250 gcttctttgttggtgaagatttttagtttaaaggagcatattcttaacattttttttgagcatgtgcttagagag 23762324  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 86 - 159
Target Start/End: Complemental strand, 27490420 - 27490347
Alignment:
Q  86 cttctttgttggtgaagatttttggtttaaaggagcatatccctaacatttatttccaacatgtgtttagagag 159  Q
    |||||||||||| | |||| ||||||||||| |||||||| |||||||||| |||| |||||||| ||||||||    
T  27490420 cttctttgttggcggagatctttggtttaaaagagcatattcctaacatttctttctaacatgtgcttagagag 27490347  T

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Target: scaffold0031 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 85 - 160
Target Start/End: Original strand, 106383 - 106458
Alignment:
Q  85 gcttctttgttggtgaagatttttggtttaaaggagcatatccctaacatttatttccaacatgtgtttagagagt 160  Q
    |||||||||||||||||||||||| | |||||||||||||| | |||||||| ||||||||||||| || ||||||    
T  106383 gcttctttgttggtgaagatttttaggttaaaggagcatattcgtaacatttctttccaacatgtgcttcgagagt 106458  T

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Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 61 - 159
Target Start/End: Original strand, 6944765 - 6944863
Alignment:
Q  61 gatcacttccatatgcatttatatgcttctttgttggtgaagatttttggtttaaaggagcatatccctaacatttatttccaacatgtgtttagagag 159  Q
    |||||||  ||||||||| ||||||| ||||||||||||||||||||||| |||||| ||||| | | | |||||| ||||||||||||| || |||||    
T  6944765 gatcactctcatatgcatgtatatgcctctttgttggtgaagatttttgggttaaagaagcatgttcgtgacatttctttccaacatgtgcttcgagag 6944863  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 136
Target Start/End: Complemental strand, 32454852 - 32454802
Alignment:
Q  86 cttctttgttggtgaagatttttggtttaaaggagcatatccctaacattt 136  Q
    |||||||||||||||| || |||||||||||||||||||| ||||||||||    
T  32454852 cttctttgttggtgaaaatctttggtttaaaggagcatattcctaacattt 32454802  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 70 - 141
Target Start/End: Original strand, 4421645 - 4421719
Alignment:
Q  70 catatgcatttatatgcttctttgttggtgaaga---tttttggtttaaaggagcatatccctaacatttatttc 141  Q
    ||||||||| |||| |||||||||||| ||||||   |||||||||||||| ||||| | |||||||||||||||    
T  4421645 catatgcatgtatacgcttctttgttgctgaagaatatttttggtttaaagaagcatgttcctaacatttatttc 4421719  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 158
Target Start/End: Complemental strand, 33228030 - 33227954
Alignment:
Q  82 tatgcttctttgttggtgaagatttttggtttaaaggagcatatccctaacatttatttccaacatgtgtttagaga 158  Q
    ||||||||||| || || |||||||||| |||||| ||||||||  |||| |||  |||||||||||| ||||||||    
T  33228030 tatgcttctttatttgtaaagatttttgatttaaatgagcatatttctaatattattttccaacatgtatttagaga 33227954  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 159
Target Start/End: Complemental strand, 1904762 - 1904697
Alignment:
Q  94 ttggtgaagatttttggtttaaaggagcatatccctaacatttatttccaacatgtgtttagagag 159  Q
    |||||||| |||||| |  ||||||||||||| | |||||||| ||||||||||||| || |||||    
T  1904762 ttggtgaatattttttggataaaggagcatattcgtaacatttctttccaacatgtgctttgagag 1904697  T

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Target: scaffold0007 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 157
Target Start/End: Original strand, 243968 - 244045
Alignment:
Q  80 tatatgcttctttgttggtgaagatttttggtttaaaggagcatatccctaacatttatttccaacatgtgtttagag 157  Q
    |||| |||||||| ||| ||||  ||||||||||||||||| |||| | |||||||| |||||| |||||| ||||||    
T  243968 tatacgcttctttattgatgaaattttttggtttaaaggagaatattcataacatttctttccatcatgtgcttagag 244045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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