View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7802_low_6 (Length: 529)
Name: NF7802_low_6
Description: NF7802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7802_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 17 - 520
Target Start/End: Complemental strand, 38728293 - 38727807
Alignment:
| Q |
17 |
ataatatatgaagtaatatataaggtagggaacaaggtgttatcagttagtgtttcttaagtgtcaagcaggctggtggggg-atagccagagtacagac |
115 |
Q |
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| T |
38728293 |
ataatatatgaagtaatatataaggtagggaacaaggtgttatcagttagtgtttcttaagtgtcaagcaggctggtggggggatagccagagtacagac |
38728194 |
T |
|
| Q |
116 |
tctgacgagtttgacaaaacattgatattctatatttgggtggttgatgcatcatttttta-ttccatattgcggtaacatttcaaaaggttggaatgaa |
214 |
Q |
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| T |
38728193 |
tctgacgagtttgacaaaacattgatattctatatttgggtggttgatgcatcattttttatttccatattgcggtaacatttc---------------a |
38728109 |
T |
|
| Q |
215 |
aaaggttgatataacaaaaagaactgtgaaggaaggacataagtattaaatattatcaatgctttatgctttgtatcctagatagggacatttttccttt |
314 |
Q |
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| T |
38728108 |
aaaggttgatataacaaaaagaactgtgaaggaaggacataagtatttaatattatcaatgctttatgctttgtatcctagatagggacatttttccttt |
38728009 |
T |
|
| Q |
315 |
atattccaaatcataccagaaatgaannnnnnnnnaattaatagtttaacaaatgcattttgcctcaccttcttgatgtaatatgtagttgttttctcgt |
414 |
Q |
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| T |
38728008 |
atattccaaatcataccagaaatgaaatttattttaattaatagtctaacaaatgcattttgcctcaccttcttgatgtaatatgtagttgttttctcgt |
38727909 |
T |
|
| Q |
415 |
ggttgatttggctacgtgactatgacttctactacacctttcaattagttggagaccattctgatgttaacagaatggattcattatattgggcttctat |
514 |
Q |
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| T |
38727908 |
ggttgatttggctacgtgactatgacttctactacacttttcaattagttggagaccattctgatgttaacagaatggattcat----ttgggcttctat |
38727813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 135 - 520
Target Start/End: Complemental strand, 4826600 - 4826219
Alignment:
| Q |
135 |
cattgatattctatatttgggtggttgatgcatcattttttattccatattgcggtaacatttcaaaaggttggaatgaaaaaggttgatataacaaaaa |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4826600 |
cattgatattctatatttgggtggttgatgcatcattttttattccatattgcggtaacatttcaaaaggttcgaatgaaaaaggttgatataacaaaaa |
4826501 |
T |
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| Q |
235 |
gaactgtgaaggaaggacataagtattaaatattatcaatgctttatgctttgtatcctagatagggacatttttcctttatattccaaatcataccaga |
334 |
Q |
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| T |
4826500 |
gaactgtgaaggaaggacataagtatttaatattatcaatgctttatgctttgtatcctagatagggacatttttcctttatattccaaatcataccaga |
4826401 |
T |
|
| Q |
335 |
aatgaannnnnnnnnaattaatagtttaacaaatgcattttgcctcaccttcttgatgtaatatgtagttgttttctcgtggttgatttggctacgtgac |
434 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
4826400 |
aatgaaatttattttaattaatagtttaacaaatgcattttgcctcaccttcttgatgtaatatgtagttgttttctcgtggttaatttggctacgtgac |
4826301 |
T |
|
| Q |
435 |
tatgacttctactacacctttcaattagttggagaccattctgatgttaacagaatggattcattatattgggcttctattcatct |
520 |
Q |
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| T |
4826300 |
tatgacttctactacacctttcaattagttggagaccattctgatgttaacagaatggattcat----ttgggcttctattcatct |
4826219 |
T |
|
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