View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7802_low_9 (Length: 468)
Name: NF7802_low_9
Description: NF7802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7802_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 26 - 449
Target Start/End: Complemental strand, 46848837 - 46848414
Alignment:
| Q |
26 |
tggtgttcaaccgaattctcatacctttccctttttgtttaagtcttgcacaaaagcgaaggcgacccatgaaggtaaacagcttcatgctcatgctttg |
125 |
Q |
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| T |
46848837 |
tggtgttcaaccgaattctcatacctttccctttttgtttaagtcttgcacaaaagcgaaggcgacccatgaaggtaaacagcttcatgctcatgctttg |
46848738 |
T |
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| Q |
126 |
aagttggcacttcattttaatccacatgttcatacttcggttattcatatgtatgcttctgttggtgaaatggactttgcacggttggtgtttgataaaa |
225 |
Q |
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| T |
46848737 |
aagttggcacttcattttaatccacatgttcatacttcggttattcatatgtatgcttctgttggtgaaatggactttgcacggttggtgtttgataaaa |
46848638 |
T |
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| Q |
226 |
gttctctgagagacgcggtttcttttacggctcttattactgggtatgtttcgcagggttgtttagatgatgctagacggctttttgatgaaattccggt |
325 |
Q |
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| T |
46848637 |
gttctctgagagacgcggtttcttttacggctcttattactgggtatgtttcgcagggttgtttagatgatgctagacggctttttgatgaaattccggt |
46848538 |
T |
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| Q |
326 |
taaagatgtggtttcgtggaatgccatgatttctgggtatgttcagagtggtcgttttgaagaagctatcgcgtgtttttatgagatgcaggaggcgaat |
425 |
Q |
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| T |
46848537 |
taaagatgtggtttcgtggaatgccatgatttctgggtatgttcagagtggtcgttttgaagaagctatcgtgtgtttttatgagatgcaggaggcgaat |
46848438 |
T |
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| Q |
426 |
gttttgccaaataagagtacaatg |
449 |
Q |
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| T |
46848437 |
gttttgccaaataagagtacaatg |
46848414 |
T |
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