View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7803_high_1 (Length: 598)
Name: NF7803_high_1
Description: NF7803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7803_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 18 - 587
Target Start/End: Complemental strand, 32764221 - 32763647
Alignment:
| Q |
18 |
atatggttatttgaacttgaatgacaaatgatgcttgcctctcactctctagcacctatgtatagggtaatacaatttccaaactttctgctaataattg |
117 |
Q |
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| T |
32764221 |
atatggttatttgaacttgaatgacaaatgatgcttgcctctcactctctagcacctatatatagggtaatacaatctccaaactttctgctaataattg |
32764122 |
T |
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| Q |
118 |
aaccgtattcactttcaacgttacaagtaaagagaacaagattaggctacagaaaataagtgcaactgacacattggatttattgaggcataaagtcatt |
217 |
Q |
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| T |
32764121 |
aaccgtattcactttcaacgttacaagtaaagagaacaagattaggctacagaaaataagtgcaactgacacattggatttattgaggcataaagtcatt |
32764022 |
T |
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| Q |
218 |
cccccaccttttacaagtggacatgactacaaacagaacagacgtatacagctcaa-gcatcgcacaaaattctcaacaaatttacaagnnnnnnnnatt |
316 |
Q |
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||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||| || ||| |
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| T |
32764021 |
cccacaccttttacaagtggacatgactacaaacagaacagatgtatacagctcaaggcatcacacaaaattctcaacaaatttac-aggtttttttatt |
32763923 |
T |
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| Q |
317 |
ggatattatg-----aaatttacnnnnnnngtttcattttctatcatacagtaaaaacccagaagnnnnnnncac-gtctatttctcaattaattgtgga |
410 |
Q |
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|||||||| | |||||||| |||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
32763922 |
ggatattaggaatctaaatttacaaaaaaagtttcactttctatcatacagtaaaaacccagaagaaaaaaacactgtctatttctcaattaattgtgga |
32763823 |
T |
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| Q |
411 |
acaatccattgaagaggagacccaaaataggctgaaaaatctagactaagcaattccctattatgagcttgaggacttcaatcaaattctagcaccactt |
510 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32763822 |
acaatccattgaagaggagacccaaaataggctgaaaaatctagact-agcaactccctattatgagcttgaggccttcaatcaaattctagcaccactt |
32763724 |
T |
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| Q |
511 |
taccttgaatgattctcttgtcttttgcctcatgagcttcttttacttgtgttatgggaaacgttttatccacaggt |
587 |
Q |
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| T |
32763723 |
taccttgaatgattctcttgtcttttgcctcatgagcttcttttacttgtgttatgggaaacgttttatccacaggt |
32763647 |
T |
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