View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7803_high_2 (Length: 443)

Name: NF7803_high_2
Description: NF7803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7803_high_2
NF7803_high_2
[»] chr5 (2 HSPs)
chr5 (1-425)||(10357975-10358399)
chr5 (253-285)||(645344-645376)
[»] chr7 (4 HSPs)
chr7 (244-285)||(10893875-10893916)
chr7 (254-285)||(30737168-30737199)
chr7 (248-285)||(18750888-18750925)
chr7 (246-278)||(37610057-37610089)
[»] chr3 (1 HSPs)
chr3 (248-285)||(30367629-30367666)
[»] chr8 (2 HSPs)
chr8 (246-285)||(32691755-32691794)
chr8 (246-284)||(8917544-8917582)
[»] chr6 (1 HSPs)
chr6 (234-279)||(10031588-10031633)
[»] chr4 (3 HSPs)
chr4 (240-285)||(683064-683109)
chr4 (245-285)||(41989576-41989616)
chr4 (241-277)||(45267889-45267925)


Alignment Details
Target: chr5 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 10358399 - 10357975
Alignment:
Q  1 tgttttagggatatcttttgaatgttgtgatttgatattgttgctgcgtcctgtttcgtgtgatttttgaaattaaaaatgaattgtaatttgtattgag 100  Q
    |||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10358399 tgttttagggatattttttgaatcttgtgatttgatattgttgttgcgtcctgtttcgtatgatttttgaaattaaaaatgaattgtaatttgtattgag 10358300  T
Q  101 tttatctgtttcattgtgatgttgcgtctggaaagtatagaataattaagaaacaatgtagttaatgtagtcgttgcctcgataacacttgacacttctg 200  Q
     |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10358299 cttatctgtttcattgtgatgttgcgtctggaaagtatagaatcattaagaaacaatgtagttaatgtagtcgttgcctcaataacacttgacacttctg 10358200  T
Q  201 attggaggtgtgtccggcattcggcacgtgtctgacactgacacaacacatttgattacattcagttatgtcattttcttaaattttactggttgtgtcg 300  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10358199 attgaaggtgtgtccggcattcggcacgtgtctgacactgacacaacacatttgattacattcagttatgtcattttcttaaattttactggttgtgtcg 10358100  T
Q  301 gtgcttcataggtcattgctaaagtttatttaaaagaaagaaaatgtgttgctacattgctgtgagatatttactatgcattctgtgatgtaatgatagt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  10358099 gtgcttcataggtcattgctaaagtttatttaaaagaaagaaaatgtgttgctacattgctgtgagatatttagtatgcattctgtgatgtaatgatagt 10358000  T
Q  401 ttgaaatcggagtcttgatgtgatg 425  Q
    |||||||||||||||||||||||||    
T  10357999 ttgaaatcggagtcttgatgtgatg 10357975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 645376 - 645344
Alignment:
Q  253 tgattacattcagttatgtcattttcttaaatt 285  Q
    |||||||||||| ||||||||||||||||||||    
T  645376 tgattacattcaattatgtcattttcttaaatt 645344  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 10893875 - 10893916
Alignment:
Q  244 caacacatttgattacattcagttatgtcattttcttaaatt 285  Q
    |||||||| |||||||||||| ||||||||||||||||||||    
T  10893875 caacacatgtgattacattcaattatgtcattttcttaaatt 10893916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 285
Target Start/End: Original strand, 30737168 - 30737199
Alignment:
Q  254 gattacattcagttatgtcattttcttaaatt 285  Q
    ||||||||||||||||||||||||||||||||    
T  30737168 gattacattcagttatgtcattttcttaaatt 30737199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 285
Target Start/End: Complemental strand, 18750925 - 18750888
Alignment:
Q  248 acatttgattacattcagttatgtcattttcttaaatt 285  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  18750925 acatgtgattacattcaattatgtcattttcttaaatt 18750888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 278
Target Start/End: Original strand, 37610057 - 37610089
Alignment:
Q  246 acacatttgattacattcagttatgtcattttc 278  Q
    |||||| ||||||||||||||||||||||||||    
T  37610057 acacatgtgattacattcagttatgtcattttc 37610089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 248 - 285
Target Start/End: Original strand, 30367629 - 30367666
Alignment:
Q  248 acatttgattacattcagttatgtcattttcttaaatt 285  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  30367629 acatttgattacattcaattatgtcattttcttaaatt 30367666  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 285
Target Start/End: Complemental strand, 32691794 - 32691755
Alignment:
Q  246 acacatttgattacattcagttatgtcattttcttaaatt 285  Q
    |||||| |||||||||||| ||||||||||||||||||||    
T  32691794 acacatgtgattacattcaattatgtcattttcttaaatt 32691755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 284
Target Start/End: Original strand, 8917544 - 8917582
Alignment:
Q  246 acacatttgattacattcagttatgtcattttcttaaat 284  Q
    |||||| |||||||||||| |||||||||||||||||||    
T  8917544 acacatctgattacattcaattatgtcattttcttaaat 8917582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 279
Target Start/End: Complemental strand, 10031633 - 10031588
Alignment:
Q  234 gacactgacacaacacatttgattacattcagttatgtcattttct 279  Q
    |||||||||||||||| | |||||||||| | ||||||||||||||    
T  10031633 gacactgacacaacacttgtgattacattgaattatgtcattttct 10031588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 285
Target Start/End: Complemental strand, 683109 - 683064
Alignment:
Q  240 gacacaacacatttgattacattcagttatgtcattttcttaaatt 285  Q
    ||||| |||||| |||||||||||| |||||||||||||| |||||    
T  683109 gacacgacacatgtgattacattcaattatgtcattttctcaaatt 683064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 285
Target Start/End: Complemental strand, 41989616 - 41989576
Alignment:
Q  245 aacacatttgattacattcagttatgtcattttcttaaatt 285  Q
    |||||| || |||||||||| ||||||||||||||||||||    
T  41989616 aacacagttaattacattcaattatgtcattttcttaaatt 41989576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 277
Target Start/End: Complemental strand, 45267925 - 45267889
Alignment:
Q  241 acacaacacatttgattacattcagttatgtcatttt 277  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  45267925 acacaacacatatgattacattcaattatgtcatttt 45267889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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