View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7803_high_3 (Length: 420)
Name: NF7803_high_3
Description: NF7803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7803_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 240431 - 240028
Alignment:
| Q |
1 |
agtaacataaaaaggaaaatctaactattctattaatttatgttatgaattgaaaagaaagggtgaaacatcattaattcatggatggcaagatttacaa |
100 |
Q |
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| T |
240431 |
agtaacataaaaaggaaaatctaactattctattaatttatgttatgaattgaaaagaaagggtgaaacatcattaattcatggatggcaagatttacaa |
240332 |
T |
|
| Q |
101 |
tgcaagattgataaatggtgaaagcttaaagacataatcactagcacatgcatgcatgtaactacaactaaatgaaattaaagtagaagatatcgtggcc |
200 |
Q |
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| T |
240331 |
tgcaagattgataaatggtgaaagcttaaagacataatcactagcacatgcatgcatgtagctacaactaaatgaaattaaagtagaagatatcgtggcc |
240232 |
T |
|
| Q |
201 |
atagtagtgctcacgaaacaacaacataattaactnnnnnnnnnncatttaaactccacaaccgataggttcctcacttttatccttttcctcattatca |
300 |
Q |
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| T |
240231 |
atagtagtgctcacgaaacaacaacataattaact-aaaaaaaaacatttaaactccacaaccgataggttcctcacttttatccttttcctcattatca |
240133 |
T |
|
| Q |
301 |
tcatcctcgttcttcttttcttgttcaattttctccaattgggtctctataacaatacttttgggtggctcaattggtgctttcttttcctttttcatag |
400 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
240132 |
tcatccttgttcttcttttcttgttcaattttctccaattgggtctctataacaatacttttgggtggctcaattggtgctttcttttcctttttcatag |
240033 |
T |
|
| Q |
401 |
ctttt |
405 |
Q |
| |
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||||| |
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| T |
240032 |
ctttt |
240028 |
T |
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