View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7803_high_4 (Length: 366)

Name: NF7803_high_4
Description: NF7803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7803_high_4
NF7803_high_4
[»] chr7 (7 HSPs)
chr7 (174-366)||(43598861-43599059)
chr7 (18-104)||(43599133-43599219)
chr7 (174-254)||(43135315-43135395)
chr7 (323-366)||(12879274-12879317)
chr7 (299-366)||(41159361-41159428)
chr7 (327-366)||(43692586-43692625)
chr7 (327-366)||(49080789-49080828)
[»] chr4 (3 HSPs)
chr4 (299-366)||(46382052-46382119)
chr4 (302-366)||(55875995-55876059)
chr4 (327-366)||(43264478-43264517)
[»] chr3 (4 HSPs)
chr3 (302-366)||(28939672-28939736)
chr3 (305-366)||(49644399-49644460)
chr3 (327-365)||(35496131-35496169)
chr3 (330-366)||(11467227-11467263)
[»] chr2 (3 HSPs)
chr2 (302-366)||(40095826-40095890)
chr2 (302-365)||(29794379-29794442)
chr2 (330-366)||(8322207-8322243)
[»] chr6 (2 HSPs)
chr6 (326-366)||(10682543-10682583)
chr6 (305-365)||(31602141-31602201)
[»] chr1 (4 HSPs)
chr1 (299-366)||(27641515-27641581)
chr1 (328-365)||(50428514-50428551)
chr1 (330-362)||(16679936-16679968)
chr1 (334-366)||(26707159-26707191)
[»] scaffold0015 (1 HSPs)
scaffold0015 (327-366)||(56623-56662)
[»] chr5 (2 HSPs)
chr5 (307-366)||(14593868-14593927)
chr5 (329-366)||(34383734-34383771)
[»] scaffold0867 (1 HSPs)
scaffold0867 (305-357)||(3546-3598)


Alignment Details
Target: chr7 (Bit Score: 136; Significance: 7e-71; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 174 - 366
Target Start/End: Complemental strand, 43599059 - 43598861
Alignment:
Q  174 gaatggtgaagtttcatggagaaatgaagattttggaatttttgatgaaaatggtgattttggcaactcaaaatttcggcctccttcctctctcattttt 273  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  43599059 gaatggtgaagtttcatggagaattgaagattttggaatttttgatgaaaatgatgattttggcaactcaaaatttcggcctcctccctctctcattttt 43598960  T
Q  274 tgggt------aaaatccacattcatgcatgcaatttggtggtataaatcgactctatttaatatattatattagttcacacttctcaattatttaaac 366  Q
    |||||      | ||||||||| ||||| | |||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  43598959 tgggtacttagagaatccacatccatgcgtccaatttggtggtataaatggaccctacttaatatattatattagttcacacttctcaattatttaaac 43598861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 43599219 - 43599133
Alignment:
Q  18 aaaacccaccttaattgagcattgaaatggtctaactcactatcactttttcttgagaaattgtggttttgaattcacgaatttgag 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43599219 aaaacccaccttaattgagcattgaaatggtctaactcactatcactttttcttgagaaattgtggttttgaattcacgaatttgag 43599133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 174 - 254
Target Start/End: Complemental strand, 43135395 - 43135315
Alignment:
Q  174 gaatggtgaagtttcatggagaaatgaagattttggaatttttgatgaaaatggtgattttggcaactcaaaatttcggcc 254  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  43135395 gaatggtgaagtttcatgaagaaatgaagattttggaatttttgatgaaaatggtgattttggccactcaaaatttcggcc 43135315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 323 - 366
Target Start/End: Original strand, 12879274 - 12879317
Alignment:
Q  323 tatttaatatattatattagttcacacttctcaattatttaaac 366  Q
    |||||||||| |||||||| ||||||||||||||||||||||||    
T  12879274 tatttaatattttatattacttcacacttctcaattatttaaac 12879317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 366
Target Start/End: Original strand, 41159361 - 41159428
Alignment:
Q  299 caatttggtggtataaatcgactctatttaatatattatattagttcacacttctcaattatttaaac 366  Q
    |||||||||||||||||| ||| | | | |||||||||||||| |||||||||  |||||||||||||    
T  41159361 caatttggtggtataaatggacgccactcaatatattatattatttcacactttccaattatttaaac 41159428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 327 - 366
Target Start/End: Complemental strand, 43692625 - 43692586
Alignment:
Q  327 taatatattatattagttcacacttctcaattatttaaac 366  Q
    ||||| ||||||||| ||||||||||||||||||||||||    
T  43692625 taatacattatattatttcacacttctcaattatttaaac 43692586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 327 - 366
Target Start/End: Original strand, 49080789 - 49080828
Alignment:
Q  327 taatatattatattagttcacacttctcaattatttaaac 366  Q
    ||||||||||||||| ||||||||| ||||||||||||||    
T  49080789 taatatattatattacttcacacttttcaattatttaaac 49080828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 299 - 366
Target Start/End: Complemental strand, 46382119 - 46382052
Alignment:
Q  299 caatttggtggtataaatcgactctatttaatatattatattagttcacacttctcaattatttaaac 366  Q
    |||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  46382119 caatttggtggtataaatggaccctacttaatatattatattagttcacacttctcaattatttaaac 46382052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 302 - 366
Target Start/End: Original strand, 55875995 - 55876059
Alignment:
Q  302 tttggtggtataaatcgactctatttaatatattatattagttcacacttctcaattatttaaac 366  Q
    ||||||||||||||| ||| ||| |||||||||||||||| ||||||||||||||||||||||||    
T  55875995 tttggtggtataaatggaccctacttaatatattatattacttcacacttctcaattatttaaac 55876059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 327 - 366
Target Start/End: Original strand, 43264478 - 43264517
Alignment:
Q  327 taatatattatattagttcacacttctcaattatttaaac 366  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  43264478 taatatattatattacttcacacttctcaattatttaaac 43264517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 302 - 366
Target Start/End: Original strand, 28939672 - 28939736
Alignment:
Q  302 tttggtggtataaatcgactctatttaatatattatattagttcacacttctcaattatttaaac 366  Q
    ||||||||||||||| ||| | |  ||||||||||||||| ||||||||||||||||||||||||    
T  28939672 tttggtggtataaatagaccccacctaatatattatattacttcacacttctcaattatttaaac 28939736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 305 - 366
Target Start/End: Complemental strand, 49644460 - 49644399
Alignment:
Q  305 ggtggtataaatcgactctatttaatatattatattagttcacacttctcaattatttaaac 366  Q
    |||||| ||||| ||| | | |||||||||||||||| ||||||||||||||||||||||||    
T  49644460 ggtggtttaaatggaccccacttaatatattatattacttcacacttctcaattatttaaac 49644399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 327 - 365
Target Start/End: Original strand, 35496131 - 35496169
Alignment:
Q  327 taatatattatattagttcacacttctcaattatttaaa 365  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  35496131 taatatattatattacttcacacttctcaattatttaaa 35496169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 366
Target Start/End: Original strand, 11467227 - 11467263
Alignment:
Q  330 tatattatattagttcacacttctcaattatttaaac 366  Q
    |||||||||||| ||||||||||||||||||||||||    
T  11467227 tatattatattacttcacacttctcaattatttaaac 11467263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 302 - 366
Target Start/End: Complemental strand, 40095890 - 40095826
Alignment:
Q  302 tttggtggtataaatcgactctatttaatatattatattagttcacacttctcaattatttaaac 366  Q
    ||||||||||||||| ||| | || ||||||||||||||| || |||||||||||||||||||||    
T  40095890 tttggtggtataaatggaccccatctaatatattatattactttacacttctcaattatttaaac 40095826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 302 - 365
Target Start/End: Complemental strand, 29794442 - 29794379
Alignment:
Q  302 tttggtggtataaatcgactctatttaatatattatattagttcacacttctcaattatttaaa 365  Q
    ||||||||||||||| ||||| |  ||||||||||||||| ||||||||| || ||||||||||    
T  29794442 tttggtggtataaatggactccacctaatatattatattatttcacacttttcgattatttaaa 29794379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 330 - 366
Target Start/End: Complemental strand, 8322243 - 8322207
Alignment:
Q  330 tatattatattagttcacacttctcaattatttaaac 366  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  8322243 tatattatattacttcacacttttcaattatttaaac 8322207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 326 - 366
Target Start/End: Complemental strand, 10682583 - 10682543
Alignment:
Q  326 ttaatatattatattagttcacacttctcaattatttaaac 366  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  10682583 ttaatatattatattacttcacacttctcaattatttaaac 10682543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 365
Target Start/End: Original strand, 31602141 - 31602201
Alignment:
Q  305 ggtggtataaatcgactctatttaatatattatattagttcacacttctcaattatttaaa 365  Q
    |||||||||||| |||   ||| ||||| |||||||| |||||||||||||||||||||||    
T  31602141 ggtggtataaatagacctcattcaatattttatattaattcacacttctcaattatttaaa 31602201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 366
Target Start/End: Original strand, 27641515 - 27641581
Alignment:
Q  299 caatttggtggtataaatcgactctatttaatatattatattagttcacacttctcaattatttaaac 366  Q
    |||||||||||||||||| |||  |||| |||| |||||||||||||| |||||||| ||||||||||    
T  27641515 caatttggtggtataaatggaca-tattcaatacattatattagttcatacttctcagttatttaaac 27641581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 365
Target Start/End: Complemental strand, 50428551 - 50428514
Alignment:
Q  328 aatatattatattagttcacacttctcaattatttaaa 365  Q
    |||| ||||||||| |||||||||||||||||||||||    
T  50428551 aataaattatattacttcacacttctcaattatttaaa 50428514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 330 - 362
Target Start/End: Original strand, 16679936 - 16679968
Alignment:
Q  330 tatattatattagttcacacttctcaattattt 362  Q
    |||||||||||| ||||||||||||||||||||    
T  16679936 tatattatattacttcacacttctcaattattt 16679968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 334 - 366
Target Start/End: Complemental strand, 26707191 - 26707159
Alignment:
Q  334 ttatattagttcacacttctcaattatttaaac 366  Q
    |||||||||||||||||| ||||||||||||||    
T  26707191 ttatattagttcacacttttcaattatttaaac 26707159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 327 - 366
Target Start/End: Complemental strand, 56662 - 56623
Alignment:
Q  327 taatatattatattagttcacacttctcaattatttaaac 366  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  56662 taatatattatattactttacacttctcaattatttaaac 56623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 366
Target Start/End: Original strand, 14593868 - 14593927
Alignment:
Q  307 tggtataaatcgactctatttaatatattatattagttcacacttctcaattatttaaac 366  Q
    |||||||||| ||||| | | |||||||||||||| ||||||  ||||||||||||||||    
T  14593868 tggtataaatggactccactcaatatattatattacttcacaaatctcaattatttaaac 14593927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 366
Target Start/End: Complemental strand, 34383771 - 34383734
Alignment:
Q  329 atatattatattagttcacacttctcaattatttaaac 366  Q
    ||||||||||||| || |||||||||||||||||||||    
T  34383771 atatattatattactttacacttctcaattatttaaac 34383734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0867 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 3598 - 3546
Alignment:
Q  305 ggtggtataaatcgactctatttaatatattatattagttcacacttctcaat 357  Q
    |||||| ||||| ||| | | |||||||||||||||| |||||||||||||||    
T  3598 ggtggtttaaatagaccccacttaatatattatattacttcacacttctcaat 3546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University