View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7803_high_8 (Length: 249)
Name: NF7803_high_8
Description: NF7803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7803_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 22 - 225
Target Start/End: Complemental strand, 35867511 - 35867308
Alignment:
| Q |
22 |
acgatgcacgccaagatcaacaggaaaaagttgaataaactcaatatcatcaaaatctggtaattaaaatcacttttactcataatcgattatttacatg |
121 |
Q |
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| T |
35867511 |
acgatgcacgccaagatcaacaggaagaagttgaataagctcaatatcatcaaaatctggtaattaaaatcacttttactcataatcgattatttacatg |
35867412 |
T |
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| Q |
122 |
cttatccttcttcttcttcaactgaaatcgtttcttcacagtgaagagattctgaatccagcgattcccatggctctgagactttctggaatactcatgg |
221 |
Q |
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| T |
35867411 |
cttattcttcttcttctttaactgaaatcgtttcttcacagtgaagagattctgaatccagcgattcccatggctctgagactttctggaatactcatgg |
35867312 |
T |
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| Q |
222 |
gtaa |
225 |
Q |
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|||| |
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| T |
35867311 |
gtaa |
35867308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 153 - 225
Target Start/End: Complemental strand, 34817319 - 34817247
Alignment:
| Q |
153 |
ttcttcacagtgaagagattctgaatccagcgattcccatggctctgagactttctggaatactcatgggtaa |
225 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
34817319 |
ttcttcacagtgaagaaattctgaatccagcgattcccatggctcttagactttctggaatactcatgggtaa |
34817247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 34817450 - 34817388
Alignment:
| Q |
22 |
acgatgcacgccaagatcaacaggaaaaagttgaataaactcaatatcatcaaaatctggtaa |
84 |
Q |
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||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
34817450 |
acgatgcacgctaagatcaacaggaagaagttgaataagctcaatatcatcaaaatctggtaa |
34817388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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