View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7803_low_1 (Length: 677)
Name: NF7803_low_1
Description: NF7803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7803_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 325 - 671
Target Start/End: Complemental strand, 35312357 - 35312016
Alignment:
| Q |
325 |
aatgaaatgtatgagaaaatctgatggattgacagcacaacccaacccactgacggtcttatgatttcaaagactacagatttgacatttgaattgtctt |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35312357 |
aatgaaatgtatgagaaaatctgatggattgacagcacaacccaacccactgacggtcttatgatttcaaagactacagatttgacatttgaattgtctt |
35312258 |
T |
|
| Q |
425 |
ttcataatctctctctttctc------acacttctctgcagactgaatacacggttggaactgcatttcaaattttagcagcttttacttttgcatttca |
518 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35312257 |
ttcataatctctctctctctctctctcacacttctctgcagactgaatacacggttggaactgcatttcaaattttagcagcttttacttttgcatttca |
35312158 |
T |
|
| Q |
519 |
tacgtactactactacttcattactacgtgattcatcaagtatttttacctagcacacacatactactcataaagatttttggacttttctacacttata |
618 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35312157 |
tacgtactactactactt-----------gattcatcaagtatttttacctagcacacacatactactcataaagatttttggacttttctacacttata |
35312069 |
T |
|
| Q |
619 |
cgaattttgtactagtctatagtatacgtttaattcaatccagtttcatttca |
671 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35312068 |
cgaattttgtactagtctatagtatacgtttaattcaatccagtttcatttca |
35312016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 154
Target Start/End: Complemental strand, 35312587 - 35312438
Alignment:
| Q |
16 |
caaaatgtttataacttgttctctgtttagtttcnnnnnnnnnnn--ggttacgttcgctgtttagtttgaataatcttttgctgnnnnnnnnn------ |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35312587 |
caaaatgtttataacttgttctctgtttagtttctttttttttttttggttacgttcgctgtttagtttgaataatcttttgctgttttttttttttttt |
35312488 |
T |
|
| Q |
108 |
-ccacttaaataactattgtata--atattatattgaacattatacacat |
154 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35312487 |
tccacttaaataactattgtatataatattatattgaacattatacacat |
35312438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University