View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7803_low_10 (Length: 359)
Name: NF7803_low_10
Description: NF7803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7803_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 17 - 346
Target Start/End: Complemental strand, 48482948 - 48482619
Alignment:
| Q |
17 |
acttgtgtgatctgtaaacaaagtcatggttcctgtacaagttgttgcaagtgtgctacatattttcacgtgatgtgtgcatcaaggatgggatatagca |
116 |
Q |
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| T |
48482948 |
acttgtgtgatctgtaaacaaagtcatggttcctgtacaagttgttgcaagtgtgctacatattttcacgtgatgtgtgcatcaaggatgggatatagca |
48482849 |
T |
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| Q |
117 |
tggcggtaagtatgatgatccttttacttaaatttaaactagtccttgatctgaagctgctactttttcttctgaatttgctcnnnnnnnggagggcagc |
216 |
Q |
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| T |
48482848 |
tggcggtaagtatgatgatccttttacttaaatttaaactagtccttgatctgaagctgctactttttcttctgaatttgctctttttttggagggcagc |
48482749 |
T |
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| Q |
217 |
aaagtcatttatgtccataatcaatatatagatttttatggaagtaagcatttagttacatggctattacttccgctgctgggaaaatatgttgatattg |
316 |
Q |
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| T |
48482748 |
aaagtcatttatgtccataatcaatatatagatttttatggaagtaagcatttagttacatggctattacttccgctgctgggaaaatatgttgatattg |
48482649 |
T |
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| Q |
317 |
tttaaatgtacagttgcgttctacagtgaa |
346 |
Q |
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| T |
48482648 |
tttaaatgtacagttgcgttctacagtgaa |
48482619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 10037579 - 10037661
Alignment:
| Q |
20 |
tgtgtgatctgtaaacaaagtcatggttcctgtacaagttgttgcaagtgtgctacatattttcacgtgatgtgtgcatcaag |
102 |
Q |
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| T |
10037579 |
tgtgtaatttgtaaacaaagccatggttcttgtacaagttgttgcaagtgttctactcattttcatgtaatgtgcgcatcaag |
10037661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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