View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7803_low_12 (Length: 340)

Name: NF7803_low_12
Description: NF7803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7803_low_12
NF7803_low_12
[»] chr8 (23 HSPs)
chr8 (1-326)||(9700109-9700434)
chr8 (6-52)||(31891924-31891970)
chr8 (1-49)||(16162868-16162916)
chr8 (16-51)||(27493060-27493095)
chr8 (13-49)||(38602447-38602483)
chr8 (5-48)||(10075468-10075511)
chr8 (9-52)||(16825454-16825497)
chr8 (13-52)||(30251365-30251404)
chr8 (13-52)||(37461261-37461300)
chr8 (6-44)||(9130238-9130276)
chr8 (8-54)||(31862607-31862652)
chr8 (1-47)||(42215216-42215262)
chr8 (1-47)||(44236739-44236785)
chr8 (1-50)||(1117415-1117464)
chr8 (15-52)||(33553362-33553399)
chr8 (5-50)||(38874817-38874862)
chr8 (6-47)||(43045641-43045682)
chr8 (1-33)||(1664477-1664509)
chr8 (6-46)||(4764007-4764047)
chr8 (1-45)||(10062059-10062103)
chr8 (3-47)||(29699381-29699425)
chr8 (1-49)||(31884854-31884902)
chr8 (6-46)||(43368617-43368657)
[»] chr3 (18 HSPs)
chr3 (1-46)||(40240738-40240783)
chr3 (1-49)||(51929849-51929897)
chr3 (1-49)||(44014712-44014760)
chr3 (6-44)||(24684741-24684779)
chr3 (6-43)||(584159-584196)
chr3 (1-46)||(11041376-11041421)
chr3 (1-44)||(50211843-50211886)
chr3 (1-31)||(23326123-23326153)
chr3 (1-39)||(41644369-41644407)
chr3 (15-52)||(5407365-5407402)
chr3 (1-50)||(25459543-25459592)
chr3 (5-46)||(49845457-49845498)
chr3 (5-50)||(53762307-53762352)
chr3 (16-52)||(1820043-1820079)
chr3 (1-45)||(11253609-11253653)
chr3 (15-51)||(15304280-15304316)
chr3 (1-37)||(39769645-39769681)
chr3 (6-50)||(39980842-39980886)
[»] chr7 (18 HSPs)
chr7 (1-51)||(17988945-17988995)
chr7 (1-52)||(529470-529521)
chr7 (1-44)||(23214963-23215006)
chr7 (1-44)||(40598404-40598447)
chr7 (6-52)||(25596145-25596191)
chr7 (6-50)||(40252036-40252080)
chr7 (1-44)||(1418527-1418570)
chr7 (1-44)||(31341243-31341286)
chr7 (13-64)||(37064367-37064418)
chr7 (16-54)||(28727672-28727710)
chr7 (6-43)||(25659805-25659842)
chr7 (1-38)||(29269474-29269511)
chr7 (16-48)||(4970707-4970739)
chr7 (13-45)||(30134252-30134284)
chr7 (6-50)||(34083521-34083565)
chr7 (6-50)||(36517690-36517734)
chr7 (16-52)||(40371565-40371601)
chr7 (1-45)||(47046026-47046070)
[»] chr6 (14 HSPs)
chr6 (1-55)||(12111075-12111129)
chr6 (6-48)||(32205928-32205970)
chr6 (6-47)||(2460067-2460108)
chr6 (1-45)||(34531508-34531552)
chr6 (6-45)||(835179-835218)
chr6 (7-45)||(9202903-9202941)
chr6 (1-31)||(34429646-34429676)
chr6 (6-47)||(103543-103584)
chr6 (1-50)||(4325218-4325267)
chr6 (6-39)||(31338090-31338123)
chr6 (15-43)||(738461-738489)
chr6 (6-50)||(848102-848145)
chr6 (16-52)||(9109025-9109061)
chr6 (13-49)||(30536879-30536915)
[»] chr5 (21 HSPs)
chr5 (6-52)||(7705909-7705955)
chr5 (4-52)||(9174927-9174975)
chr5 (1-48)||(6938648-6938695)
chr5 (1-52)||(8651263-8651314)
chr5 (1-52)||(11153357-11153408)
chr5 (1-50)||(14599285-14599334)
chr5 (1-46)||(26004914-26004959)
chr5 (1-42)||(31723913-31723954)
chr5 (15-52)||(35299887-35299924)
chr5 (6-46)||(16937800-16937840)
chr5 (13-52)||(14331486-14331525)
chr5 (1-48)||(40335788-40335835)
chr5 (6-44)||(8820873-8820911)
chr5 (1-47)||(25705575-25705621)
chr5 (3-40)||(5946487-5946524)
chr5 (1-42)||(11615575-11615616)
chr5 (14-51)||(39594928-39594965)
chr5 (13-45)||(6715869-6715901)
chr5 (1-45)||(6717222-6717266)
chr5 (13-49)||(10640073-10640109)
chr5 (1-45)||(34198529-34198573)
[»] chr4 (25 HSPs)
chr4 (13-48)||(17822780-17822815)
chr4 (6-52)||(18815136-18815182)
chr4 (6-48)||(39691064-39691106)
chr4 (1-42)||(3637299-3637340)
chr4 (1-50)||(21953381-21953430)
chr4 (7-52)||(23319965-23320010)
chr4 (6-47)||(27123268-27123309)
chr4 (1-45)||(18512433-18512477)
chr4 (1-49)||(22662165-22662213)
chr4 (1-49)||(22666644-22666692)
chr4 (1-45)||(28615442-28615486)
chr4 (6-50)||(35571544-35571588)
chr4 (1-44)||(24193640-24193683)
chr4 (13-52)||(27043741-27043780)
chr4 (17-52)||(42403934-42403969)
chr4 (1-44)||(46187828-46187871)
chr4 (1-44)||(56186817-56186860)
chr4 (1-42)||(32420979-32421020)
chr4 (23-52)||(41512769-41512798)
chr4 (6-47)||(54426156-54426197)
chr4 (1-45)||(17975255-17975299)
chr4 (14-50)||(32769500-32769536)
chr4 (4-44)||(37575855-37575895)
chr4 (7-51)||(44638138-44638182)
chr4 (6-50)||(55414326-55414370)
[»] chr2 (25 HSPs)
chr2 (6-49)||(449960-450003)
chr2 (1-52)||(28810363-28810414)
chr2 (6-52)||(9996851-9996897)
chr2 (3-45)||(15120293-15120335)
chr2 (6-48)||(15370238-15370280)
chr2 (1-50)||(2964722-2964771)
chr2 (6-51)||(10563472-10563517)
chr2 (6-45)||(18179062-18179101)
chr2 (1-52)||(33931481-33931532)
chr2 (1-44)||(35329737-35329780)
chr2 (6-52)||(2790351-2790397)
chr2 (16-50)||(26202151-26202185)
chr2 (6-47)||(5043476-5043517)
chr2 (15-52)||(7928209-7928246)
chr2 (14-47)||(27317500-27317533)
chr2 (6-47)||(33503111-33503152)
chr2 (6-47)||(37448693-37448734)
chr2 (1-46)||(41170718-41170763)
chr2 (1-54)||(43259943-43259996)
chr2 (6-42)||(1633421-1633457)
chr2 (1-45)||(3078526-3078570)
chr2 (14-50)||(4607046-4607082)
chr2 (14-50)||(6772446-6772482)
chr2 (1-45)||(24097917-24097961)
chr2 (1-45)||(30990357-30990401)
[»] chr1 (24 HSPs)
chr1 (1-52)||(10199319-10199370)
chr1 (2-45)||(52013996-52014039)
chr1 (1-46)||(33723299-33723344)
chr1 (1-41)||(2832080-2832120)
chr1 (13-52)||(2295311-2295350)
chr1 (9-44)||(3319865-3319900)
chr1 (1-43)||(6659788-6659830)
chr1 (6-52)||(15477666-15477712)
chr1 (7-45)||(30013997-30014035)
chr1 (15-45)||(37431858-37431888)
chr1 (6-48)||(40303994-40304036)
chr1 (5-43)||(42575389-42575427)
chr1 (3-52)||(14128382-14128431)
chr1 (1-50)||(15558319-15558368)
chr1 (6-51)||(21002268-21002313)
chr1 (13-50)||(24460314-24460351)
chr1 (7-44)||(50644174-50644211)
chr1 (9-45)||(1565064-1565100)
chr1 (1-41)||(2522704-2522744)
chr1 (6-50)||(4276563-4276607)
chr1 (1-49)||(7217988-7218036)
chr1 (2-38)||(15515665-15515701)
chr1 (8-44)||(29045852-29045888)
chr1 (18-50)||(36523201-36523233)
[»] scaffold0020 (1 HSPs)
scaffold0020 (1-49)||(159887-159935)
[»] scaffold0199 (1 HSPs)
scaffold0199 (1-33)||(6918-6950)


Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 9700109 - 9700434
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaacaggcccttactcaagcatgtgatgggaattatatcattttttcacgccgcattgtta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9700109 agtgtttatgctagtagataagctcaaataagttaatccaaacaggcccttactcaagcatgtgatgggaattatatcattttttcacgccgcattgtta 9700208  T
Q  101 tttttatatttttcaggcaactggaaacgtgcttatgcagctgttaagcattttgttgaatgcctgatttctaattatgatcctaaaaagagacagatca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9700209 tttttatatttttcaggcaactggaaacgtgcttatgcagctgttaagcattttgttgaatgcctgatttctaattatgatcctaaaaagagacagatca 9700308  T
Q  201 ccaaaaggaatggtcttccaagtatcatattgtcagattatttagaaggccgtatgccaaaaagttcgcaagataagggatttaattggagtggggatgt 300  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9700309 ccagaaggaatggtcttccaagtatcatattgtcagattatttagaaggccgtatgccaaaaagttcgcaagataagggatttaattggagtggggatgt 9700408  T
Q  301 tgcgtcaatcacttcattttcacagg 326  Q
    ||||||||||||||||||||||||||    
T  9700409 tgcgtcaatcacttcattttcacagg 9700434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 31891924 - 31891970
Alignment:
Q  6 ttatgctagtagataagctcaaataagttaatccaaacaggccctta 52  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||    
T  31891924 ttatgctagtagataaactcaaataaattaatccaaacaggccctta 31891970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 16162868 - 16162916
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaacaggccc 49  Q
    ||||||||||||||||||||| ||||||||||  |||||||||||||||    
T  16162868 agtgtttatgctagtagataaactcaaataagccaatccaaacaggccc 16162916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 27493060 - 27493095
Alignment:
Q  16 agataagctcaaataagttaatccaaacaggccctt 51  Q
    ||||||||||||||||||||||||||||||||||||    
T  27493060 agataagctcaaataagttaatccaaacaggccctt 27493095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 38602447 - 38602483
Alignment:
Q  13 agtagataagctcaaataagttaatccaaacaggccc 49  Q
    ||||||||||||||||||||| |||||||||||||||    
T  38602447 agtagataagctcaaataagtcaatccaaacaggccc 38602483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 10075511 - 10075468
Alignment:
Q  5 tttatgctagtagataagctcaaataagttaatccaaacaggcc 48  Q
    ||||||| ||||||||| |||||||||||||||| |||||||||    
T  10075511 tttatgccagtagataaactcaaataagttaatcgaaacaggcc 10075468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 16825497 - 16825454
Alignment:
Q  9 tgctagtagataagctcaaataagttaatccaaacaggccctta 52  Q
    |||||||||||||| ||||||||| || ||||||||||||||||    
T  16825497 tgctagtagataagttcaaataagctagtccaaacaggccctta 16825454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 30251404 - 30251365
Alignment:
Q  13 agtagataagctcaaataagttaatccaaacaggccctta 52  Q
    ||||||||||||||||||||  ||||||||||||||||||    
T  30251404 agtagataagctcaaataagccaatccaaacaggccctta 30251365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 37461261 - 37461300
Alignment:
Q  13 agtagataagctcaaataagttaatccaaacaggccctta 52  Q
    |||||||||| |||||||||||||||||||||||| ||||    
T  37461261 agtagataagttcaaataagttaatccaaacaggctctta 37461300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 9130276 - 9130238
Alignment:
Q  6 ttatgctagtagataagctcaaataagttaatccaaaca 44  Q
    |||||| |||||||||||||||||||| |||||||||||    
T  9130276 ttatgccagtagataagctcaaataagctaatccaaaca 9130238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 31862607 - 31862652
Alignment:
Q  8 atgctagtagataagctcaaataagttaatccaaacaggcccttact 54  Q
    ||||||||||| |||||||||||||| ||| ||||||||||||||||    
T  31862607 atgctagtaga-aagctcaaataagtcaattcaaacaggcccttact 31862652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 42215262 - 42215216
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaacaggc 47  Q
    |||| |||||| |||| ||||||||||||||||||||| ||||||||    
T  42215262 agtgcttatgccagtaaataagctcaaataagttaatctaaacaggc 42215216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 44236785 - 44236739
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaacaggc 47  Q
    |||| |||||| ||||||||| |||||||||| ||||||||||||||    
T  44236785 agtgcttatgccagtagataaactcaaataaggtaatccaaacaggc 44236739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 1117415 - 1117464
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaacaggccct 50  Q
    |||||||||||||||| ||||| |||| ||||| |||||||||| |||||    
T  1117415 agtgtttatgctagtatataagttcaagtaagtcaatccaaacaagccct 1117464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 33553362 - 33553399
Alignment:
Q  15 tagataagctcaaataagttaatccaaacaggccctta 52  Q
    |||||||||||||||||| ||||||||||| |||||||    
T  33553362 tagataagctcaaataagctaatccaaacaagccctta 33553399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 38874817 - 38874862
Alignment:
Q  5 tttatgctagtagataagctcaaataagttaatccaaacaggccct 50  Q
    |||||||||||| |||||||||||||||| |||| ||||| |||||    
T  38874817 tttatgctagtaaataagctcaaataagtcaatctaaacatgccct 38874862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 43045682 - 43045641
Alignment:
Q  6 ttatgctagtagataagctcaaataagttaatccaaacaggc 47  Q
    ||||||||||||||||||| |||||||  |||||||||||||    
T  43045682 ttatgctagtagataagcttaaataagccaatccaaacaggc 43045641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 1664477 - 1664509
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagt 33  Q
    ||||||||||||||||||||| |||||||||||    
T  1664477 agtgtttatgctagtagataaactcaaataagt 1664509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 4764007 - 4764047
Alignment:
Q  6 ttatgctagtagataagctcaaataagttaatccaaacagg 46  Q
    |||||||||| |||||| |||||||||| ||||||||||||    
T  4764007 ttatgctagtggataagttcaaataagtcaatccaaacagg 4764047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 10062103 - 10062059
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaacag 45  Q
    |||||| ||| |||||||||||||||||||||  |||||||||||    
T  10062103 agtgttgatgttagtagataagctcaaataagccaatccaaacag 10062059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 29699381 - 29699425
Alignment:
Q  3 tgtttatgctagtagataagctcaaataagttaatccaaacaggc 47  Q
    ||||||||| || ||| |||||||||||||| |||||||||||||    
T  29699381 tgtttatgccagcagagaagctcaaataagtcaatccaaacaggc 29699425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 31884902 - 31884854
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaacaggccc 49  Q
    |||| ||||||||||||||||||||||||||   ||||||| |||||||    
T  31884902 agtgcttatgctagtagataagctcaaataacgcaatccaagcaggccc 31884854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 43368657 - 43368617
Alignment:
Q  6 ttatgctagtagataagctcaaataagttaatccaaacagg 46  Q
    ||||| ||||||||||| |||||||||| ||||||||||||    
T  43368657 ttatgttagtagataagatcaaataagtcaatccaaacagg 43368617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 40240783 - 40240738
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaacagg 46  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  40240783 agtgtttatgctagtatataagctcaaataagttaatccaaacagg 40240738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 51929849 - 51929897
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaacaggccc 49  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  51929849 agtgtttatgctaatagataagctcaaataagtcaatccaaacaggccc 51929897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 44014760 - 44014712
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaacaggccc 49  Q
    ||||||||||||||||||||| ||||||||||  |||||||||||||||    
T  44014760 agtgtttatgctagtagataaactcaaataagccaatccaaacaggccc 44014712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 24684779 - 24684741
Alignment:
Q  6 ttatgctagtagataagctcaaataagttaatccaaaca 44  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  24684779 ttatgccagtagataagctcaaataagttaatccaaaca 24684741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 584159 - 584196
Alignment:
Q  6 ttatgctagtagataagctcaaataagttaatccaaac 43  Q
    |||||||||||||||||||||||||||| |||||||||    
T  584159 ttatgctagtagataagctcaaataagtcaatccaaac 584196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 11041421 - 11041376
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaacagg 46  Q
    |||||||||||||| |||||||||||| ||||| ||||||||||||    
T  11041421 agtgtttatgctagcagataagctcaattaagtcaatccaaacagg 11041376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 50211843 - 50211886
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaaca 44  Q
    |||| ||||| ||||||||||||| |||||||||||||||||||    
T  50211843 agtgcttatgttagtagataagctaaaataagttaatccaaaca 50211886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 23326153 - 23326123
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataa 31  Q
    |||||||||||||||||||||||||||||||    
T  23326153 agtgtttatgctagtagataagctcaaataa 23326123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 41644407 - 41644369
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatcc 39  Q
    |||| ||||||||||||||||||||||| ||||||||||    
T  41644407 agtgcttatgctagtagataagctcaaagaagttaatcc 41644369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 5407402 - 5407365
Alignment:
Q  15 tagataagctcaaataagttaatccaaacaggccctta 52  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  5407402 tagataagctcaaataagctaatgcaaacaggccctta 5407365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 25459592 - 25459543
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaacaggccct 50  Q
    |||| |||||||||| ||||||||||||||| | ||||||||||| ||||    
T  25459592 agtgcttatgctagttgataagctcaaataaatcaatccaaacagaccct 25459543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 49845498 - 49845457
Alignment:
Q  5 tttatgctagtagataagctcaaataagttaatccaaacagg 46  Q
    ||||| |||||| |||||||||||||||| ||||||||||||    
T  49845498 tttatactagtatataagctcaaataagtcaatccaaacagg 49845457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 53762352 - 53762307
Alignment:
Q  5 tttatgctagtagataagctcaaataagttaatccaaacaggccct 50  Q
    |||||||||||||||||||||||||||   ||||||| ||||||||    
T  53762352 tttatgctagtagataagctcaaataaaccaatccaagcaggccct 53762307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 1820079 - 1820043
Alignment:
Q  16 agataagctcaaataagttaatccaaacaggccctta 52  Q
    |||||||||||||||||  ||||||||||||||||||    
T  1820079 agataagctcaaataagccaatccaaacaggccctta 1820043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 11253609 - 11253653
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaacag 45  Q
    |||| |||||||||||||||| ||||||||||| ||| |||||||    
T  11253609 agtgcttatgctagtagataatctcaaataagtcaattcaaacag 11253653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 15304316 - 15304280
Alignment:
Q  15 tagataagctcaaataagttaatccaaacaggccctt 51  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  15304316 tagataagctcaaataagtcaattcaaacaggccctt 15304280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 39769645 - 39769681
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaat 37  Q
    ||||||||||| |||||||||| ||||||||||||||    
T  39769645 agtgtttatgcgagtagataagttcaaataagttaat 39769681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 39980842 - 39980886
Alignment:
Q  6 ttatgctagtagataagctcaaataagttaatccaaacaggccct 50  Q
    ||||||||||||||||||||||| |||  ||||||||||| ||||    
T  39980842 ttatgctagtagataagctcaaacaagccaatccaaacagaccct 39980886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 17988995 - 17988945
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaacaggccctt 51  Q
    |||| |||||| |||||||||||||||||||||||||||||||| ||||||    
T  17988995 agtgattatgcgagtagataagctcaaataagttaatccaaacaagccctt 17988945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 529470 - 529521
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaacaggccctta 52  Q
    ||||||||||| ||||||||||||||||||||| ||||||| ||| ||||||    
T  529470 agtgtttatgccagtagataagctcaaataagtcaatccaatcagaccctta 529521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 23214963 - 23215006
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaaca 44  Q
    |||||||||||||||||||||| |||||||||| ||||||||||    
T  23214963 agtgtttatgctagtagataaggtcaaataagtcaatccaaaca 23215006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 40598447 - 40598404
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaaca 44  Q
    |||||| |||||||||||||||||||||||||| ||||||||||    
T  40598447 agtgttcatgctagtagataagctcaaataagtcaatccaaaca 40598404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 25596145 - 25596191
Alignment:
Q  6 ttatgctagtagataagctcaaataagttaatccaaacaggccctta 52  Q
    ||||||| |||||||||||||||||||| | ||||||||||||||||    
T  25596145 ttatgctggtagataagctcaaataagtcagtccaaacaggccctta 25596191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 40252080 - 40252036
Alignment:
Q  6 ttatgctagtagataagctcaaataagttaatccaaacaggccct 50  Q
    |||||||||||||||||||||||||||  ||| ||||||||||||    
T  40252080 ttatgctagtagataagctcaaataagccaattcaaacaggccct 40252036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 1418527 - 1418570
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaaca 44  Q
    |||| |||||| ||||||||||||||||||||| ||||||||||    
T  1418527 agtgcttatgccagtagataagctcaaataagtcaatccaaaca 1418570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 31341243 - 31341286
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaaca 44  Q
    ||||||||||| |||||| |||||||||||||| ||||||||||    
T  31341243 agtgtttatgcaagtagaaaagctcaaataagtcaatccaaaca 31341286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 64
Target Start/End: Complemental strand, 37064418 - 37064367
Alignment:
Q  13 agtagataagctcaaataagttaatccaaacaggcccttactcaagcatgtg 64  Q
    |||||||||| |||||||||| ||||||||||| |||||| | |||||||||    
T  37064418 agtagataagatcaaataagtcaatccaaacagacccttaattaagcatgtg 37064367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 28727710 - 28727672
Alignment:
Q  16 agataagctcaaataagttaatccaaacaggcccttact 54  Q
    ||||||||||||||||||||||||||| |||| ||||||    
T  28727710 agataagctcaaataagttaatccaaataggctcttact 28727672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 25659842 - 25659805
Alignment:
Q  6 ttatgctagtagataagctcaaataagttaatccaaac 43  Q
    ||||| |||||||||| |||||||||||||||||||||    
T  25659842 ttatgttagtagataatctcaaataagttaatccaaac 25659805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 29269474 - 29269511
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatc 38  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  29269474 agtgtttatgttagtacataagctcaaataagttaatc 29269511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 4970739 - 4970707
Alignment:
Q  16 agataagctcaaataagttaatccaaacaggcc 48  Q
    |||||||||||||||||| ||||||||||||||    
T  4970739 agataagctcaaataagtcaatccaaacaggcc 4970707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 30134252 - 30134284
Alignment:
Q  13 agtagataagctcaaataagttaatccaaacag 45  Q
    ||||||||||||||||||||||||| |||||||    
T  30134252 agtagataagctcaaataagttaattcaaacag 30134284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 34083565 - 34083521
Alignment:
Q  6 ttatgctagtagataagctcaaataagttaatccaaacaggccct 50  Q
    |||||| ||||||| ||||||||||||| |||||||||| |||||    
T  34083565 ttatgcaagtagatgagctcaaataagtcaatccaaacatgccct 34083521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 36517690 - 36517734
Alignment:
Q  6 ttatgctagtagataagctcaaataagttaatccaaacaggccct 50  Q
    |||||| ||||| ||||||||||||| | ||||||||||||||||    
T  36517690 ttatgccagtagctaagctcaaataaatgaatccaaacaggccct 36517734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 40371601 - 40371565
Alignment:
Q  16 agataagctcaaataagttaatccaaacaggccctta 52  Q
    |||||||||||||||||| |||||||||| |||||||    
T  40371601 agataagctcaaataagtcaatccaaacatgccctta 40371565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 47046070 - 47046026
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaacag 45  Q
    ||||||||||  ||||||||||| ||||||||| |||||||||||    
T  47046070 agtgtttatgtcagtagataagcacaaataagtcaatccaaacag 47046026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 12111075 - 12111129
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaacaggcccttactc 55  Q
    |||| |||||||||||||||||||||||||||| |||||||| |||||| |||||    
T  12111075 agtgcttatgctagtagataagctcaaataagtcaatccaaataggcccatactc 12111129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 48
Target Start/End: Complemental strand, 32205970 - 32205928
Alignment:
Q  6 ttatgctagtagataagctcaaataagttaatccaaacaggcc 48  Q
    ||||||||||||||||| |||||||||| ||||||||||||||    
T  32205970 ttatgctagtagataaggtcaaataagtcaatccaaacaggcc 32205928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 2460108 - 2460067
Alignment:
Q  6 ttatgctagtagataagctcaaataagttaatccaaacaggc 47  Q
    ||||||||||  ||||||||||||||||||||||||||||||    
T  2460108 ttatgctagtttataagctcaaataagttaatccaaacaggc 2460067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 34531508 - 34531552
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaacag 45  Q
    |||||||||||||| |||||||||||||| ||| |||||||||||    
T  34531508 agtgtttatgctaggagataagctcaaatcagtcaatccaaacag 34531552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 6 - 45
Target Start/End: Complemental strand, 835218 - 835179
Alignment:
Q  6 ttatgctagtagataagctcaaataagttaatccaaacag 45  Q
    |||||||||||||||||||||||||||  |||||||||||    
T  835218 ttatgctagtagataagctcaaataaggcaatccaaacag 835179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 9202941 - 9202903
Alignment:
Q  7 tatgctagtagataagctcaaataagttaatccaaacag 45  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  9202941 tatgccagtagataagctcaaataagtcaatccaaacag 9202903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 34429676 - 34429646
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataa 31  Q
    |||||||||||||||||||||||||||||||    
T  34429676 agtgtttatgctagtagataagctcaaataa 34429646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 103543 - 103584
Alignment:
Q  6 ttatgctagtagataagctcaaataagttaatccaaacaggc 47  Q
    |||||||| || |||||||||||||||| |||||||||||||    
T  103543 ttatgctaatatataagctcaaataagtcaatccaaacaggc 103584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 4325267 - 4325218
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaacaggccct 50  Q
    |||||||||| |||||||||| || |||| ||| ||||||||||||||||    
T  4325267 agtgtttatgttagtagataaactaaaattagtcaatccaaacaggccct 4325218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 31338090 - 31338123
Alignment:
Q  6 ttatgctagtagataagctcaaataagttaatcc 39  Q
    |||||||||||||||||||||||||||| |||||    
T  31338090 ttatgctagtagataagctcaaataagtcaatcc 31338123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 43
Target Start/End: Complemental strand, 738489 - 738461
Alignment:
Q  15 tagataagctcaaataagttaatccaaac 43  Q
    |||||||||||||||||||||||||||||    
T  738489 tagataagctcaaataagttaatccaaac 738461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 848102 - 848145
Alignment:
Q  6 ttatgctagtagataagctcaaataagttaatccaaacaggccct 50  Q
    |||||||| ||||||||||||||||||  ||||||||||||||||    
T  848102 ttatgcta-tagataagctcaaataaggcaatccaaacaggccct 848145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 9109061 - 9109025
Alignment:
Q  16 agataagctcaaataagttaatccaaacaggccctta 52  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  9109061 agataaactcaagtaagttaatccaaacaggccctta 9109025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 30536915 - 30536879
Alignment:
Q  13 agtagataagctcaaataagttaatccaaacaggccc 49  Q
    ||||||||| ||||||||||| |||||||||||||||    
T  30536915 agtagataaactcaaataagtcaatccaaacaggccc 30536879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 7705955 - 7705909
Alignment:
Q  6 ttatgctagtagataagctcaaataagttaatccaaacaggccctta 52  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||    
T  7705955 ttatgctagtagatatgctcaaataagtcaatccaaacaggccctta 7705909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 9174927 - 9174975
Alignment:
Q  4 gtttatgctagtagataagctcaaataagttaatccaaacaggccctta 52  Q
    |||||||||| ||||||||||||||||||| |||||||||| |||||||    
T  9174927 gtttatgctaatagataagctcaaataagtcaatccaaacatgccctta 9174975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 6938695 - 6938648
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaacaggcc 48  Q
    |||| ||||||||||||||||||||||||||  |||||||||||||||    
T  6938695 agtgcttatgctagtagataagctcaaataacctaatccaaacaggcc 6938648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 8651314 - 8651263
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaacaggccctta 52  Q
    |||||||||||||| |||||||||||||||||  |||||||||| |||||||    
T  8651314 agtgtttatgctagaagataagctcaaataaggcaatccaaacatgccctta 8651263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 11153408 - 11153357
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaacaggccctta 52  Q
    |||||||||||||||||||||||||||| |||  ||||||||||| ||||||    
T  11153408 agtgtttatgctagtagataagctcaaacaagccaatccaaacagcccctta 11153357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 14599334 - 14599285
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaacaggccct 50  Q
    |||||||||||||||| ||||| |||||||| | ||||||||||||||||    
T  14599334 agtgtttatgctagtaaataagttcaaataactgaatccaaacaggccct 14599285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 26004959 - 26004914
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaacagg 46  Q
    |||| ||||||||||||||||||| |||||||| ||||||||||||    
T  26004959 agtgcttatgctagtagataagctaaaataagtcaatccaaacagg 26004914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 31723913 - 31723954
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaa 42  Q
    |||||||||||||||| |||||||||||||||| ||||||||    
T  31723913 agtgtttatgctagtacataagctcaaataagtcaatccaaa 31723954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 52
Target Start/End: Original strand, 35299887 - 35299924
Alignment:
Q  15 tagataagctcaaataagttaatccaaacaggccctta 52  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  35299887 tagataagctcaaataagtcaatccaaacaggccctta 35299924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 16937840 - 16937800
Alignment:
Q  6 ttatgctagtagataagctcaaataagttaatccaaacagg 46  Q
    |||||||||||||||||||||||||||  ||||||||||||    
T  16937840 ttatgctagtagataagctcaaataagccaatccaaacagg 16937800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 14331486 - 14331525
Alignment:
Q  13 agtagataagctcaaataagttaatccaaacaggccctta 52  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  14331486 agtagataagctcaaataagtcaatccaaacagaccctta 14331525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 40335835 - 40335788
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaacaggcc 48  Q
    ||||||| ||| ||||||||| ||||||||||| ||||||||||||||    
T  40335835 agtgtttgtgcgagtagataaactcaaataagtcaatccaaacaggcc 40335788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 8820873 - 8820911
Alignment:
Q  6 ttatgctagtagataagctcaaataagttaatccaaaca 44  Q
    ||||||||||||||||| |||||||||| ||||||||||    
T  8820873 ttatgctagtagataagatcaaataagtaaatccaaaca 8820911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 25705621 - 25705575
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaacaggc 47  Q
    |||| ||||| ||||||||||| |||||||| |||||||||||||||    
T  25705621 agtgcttatgttagtagataagttcaaataatttaatccaaacaggc 25705575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 5946524 - 5946487
Alignment:
Q  3 tgtttatgctagtagataagctcaaataagttaatcca 40  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  5946524 tgtttatgctagtagataagttcaaataagtcaatcca 5946487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 11615616 - 11615575
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaa 42  Q
    |||||||||| |||||||||||||||||||||  ||||||||    
T  11615616 agtgtttatgttagtagataagctcaaataagccaatccaaa 11615575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 39594928 - 39594965
Alignment:
Q  14 gtagataagctcaaataagttaatccaaacaggccctt 51  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  39594928 gtagataagctcaaataagtcaatccaaacaagccctt 39594965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 6715901 - 6715869
Alignment:
Q  13 agtagataagctcaaataagttaatccaaacag 45  Q
    ||||||||||||| |||||||||||||||||||    
T  6715901 agtagataagctcgaataagttaatccaaacag 6715869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 6717222 - 6717266
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaacag 45  Q
    |||||||||||||| ||||||||| |||||||| ||| |||||||    
T  6717222 agtgtttatgctagcagataagcttaaataagtcaattcaaacag 6717266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 10640073 - 10640109
Alignment:
Q  13 agtagataagctcaaataagttaatccaaacaggccc 49  Q
    ||||||||| |||||||||| ||||||||||||||||    
T  10640073 agtagataaactcaaataagctaatccaaacaggccc 10640109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 34198529 - 34198573
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaacag 45  Q
    |||||||||| ||||| |||| ||||||||||| |||||||||||    
T  34198529 agtgtttatgttagtaaataaactcaaataagtcaatccaaacag 34198573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 48
Target Start/End: Complemental strand, 17822815 - 17822780
Alignment:
Q  13 agtagataagctcaaataagttaatccaaacaggcc 48  Q
    ||||||||||||||||||||||||||||||||||||    
T  17822815 agtagataagctcaaataagttaatccaaacaggcc 17822780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 18815136 - 18815182
Alignment:
Q  6 ttatgctagtagataagctcaaataagttaatccaaacaggccctta 52  Q
    |||||||||||| ||||||||||||||  ||||||||||||||||||    
T  18815136 ttatgctagtaggtaagctcaaataagccaatccaaacaggccctta 18815182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 48
Target Start/End: Complemental strand, 39691106 - 39691064
Alignment:
Q  6 ttatgctagtagataagctcaaataagttaatccaaacaggcc 48  Q
    |||||||||||||||||||||||||||| ||| ||||||||||    
T  39691106 ttatgctagtagataagctcaaataagtcaattcaaacaggcc 39691064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 3637340 - 3637299
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaa 42  Q
    ||||||||||||| ||||||||||||||||||| ||||||||    
T  3637340 agtgtttatgctaatagataagctcaaataagtcaatccaaa 3637299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 21953381 - 21953430
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaacaggccct 50  Q
    |||| |||||||| ||||||||||||||||||| ||||||||||| ||||    
T  21953381 agtgattatgctactagataagctcaaataagtcaatccaaacagaccct 21953430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 23319965 - 23320010
Alignment:
Q  7 tatgctagtagataagctcaaataagttaatccaaacaggccctta 52  Q
    ||||||||||||||| ||||||||||  ||||||||||||||||||    
T  23319965 tatgctagtagataatctcaaataagccaatccaaacaggccctta 23320010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 27123309 - 27123268
Alignment:
Q  6 ttatgctagtagataagctcaaataagttaatccaaacaggc 47  Q
    ||||||||||  ||||||||||||||||||||||||||||||    
T  27123309 ttatgctagtttataagctcaaataagttaatccaaacaggc 27123268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 18512477 - 18512433
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaacag 45  Q
    ||||||||||  |||||||||||||||||||||||||| ||||||    
T  18512477 agtgtttatgtcagtagataagctcaaataagttaatcgaaacag 18512433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 22662213 - 22662165
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaacaggccc 49  Q
    |||| ||||| |||||||||| ||||||||||| |||||||||||||||    
T  22662213 agtgcttatgttagtagataaactcaaataagtcaatccaaacaggccc 22662165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 22666692 - 22666644
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaacaggccc 49  Q
    |||| ||||| |||||||||| ||||||||||| |||||||||||||||    
T  22666692 agtgcttatgttagtagataaactcaaataagtcaatccaaacaggccc 22666644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 28615442 - 28615486
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaacag 45  Q
    ||||||||||||||||||||| || |||||||| |||||||||||    
T  28615442 agtgtttatgctagtagataaacttaaataagtcaatccaaacag 28615486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 35571588 - 35571544
Alignment:
Q  6 ttatgctagtagataagctcaaataagttaatccaaacaggccct 50  Q
    |||||||||||||||||||||||||||  ||||||||||| ||||    
T  35571588 ttatgctagtagataagctcaaataagccaatccaaacagaccct 35571544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 24193640 - 24193683
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaaca 44  Q
    ||||||||||| || |||||||||||||||||| ||||||||||    
T  24193640 agtgtttatgccaggagataagctcaaataagtcaatccaaaca 24193683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 27043780 - 27043741
Alignment:
Q  13 agtagataagctcaaataagttaatccaaacaggccctta 52  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  27043780 agtagataagctcaaataagtcaatccaaacagaccctta 27043741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 52
Target Start/End: Complemental strand, 42403969 - 42403934
Alignment:
Q  17 gataagctcaaataagttaatccaaacaggccctta 52  Q
    ||||||||||||||||| ||||||||||||||||||    
T  42403969 gataagctcaaataagtcaatccaaacaggccctta 42403934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 46187871 - 46187828
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaaca 44  Q
    ||||||||||| |||||||||||||||||||| | |||||||||    
T  46187871 agtgtttatgccagtagataagctcaaataagatcatccaaaca 46187828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 56186860 - 56186817
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaaca 44  Q
    |||||||||| |||||||||| ||| ||||||||||||||||||    
T  56186860 agtgtttatgttagtagataaactcgaataagttaatccaaaca 56186817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 32421020 - 32420979
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaa 42  Q
    |||| |||||||||||| ||||||||||||||| ||||||||    
T  32421020 agtgcttatgctagtaggtaagctcaaataagtcaatccaaa 32420979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 52
Target Start/End: Original strand, 41512769 - 41512798
Alignment:
Q  23 ctcaaataagttaatccaaacaggccctta 52  Q
    ||||||||||||||||||||||||||||||    
T  41512769 ctcaaataagttaatccaaacaggccctta 41512798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 54426156 - 54426197
Alignment:
Q  6 ttatgctagtagataagctcaaataagttaatccaaacaggc 47  Q
    |||||| ||||||||||||||||||||  |||||||||||||    
T  54426156 ttatgccagtagataagctcaaataagccaatccaaacaggc 54426197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 17975299 - 17975255
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaacag 45  Q
    ||||||| || | |||||||||||||||||||| |||||||||||    
T  17975299 agtgtttgtgttggtagataagctcaaataagtcaatccaaacag 17975255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 32769500 - 32769536
Alignment:
Q  14 gtagataagctcaaataagttaatccaaacaggccct 50  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  32769500 gtagataagctaaaataagtcaatccaaacaggccct 32769536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 37575895 - 37575855
Alignment:
Q  4 gtttatgctagtagataagctcaaataagttaatccaaaca 44  Q
    ||||||||||| |||||| ||||||||||| ||||||||||    
T  37575895 gtttatgctagcagataaactcaaataagtcaatccaaaca 37575855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 44638182 - 44638138
Alignment:
Q  7 tatgctagtagataagctcaaataagttaatccaaacaggccctt 51  Q
    |||||||||| |||| ||||||||||| |||||||||| ||||||    
T  44638182 tatgctagtaaataaactcaaataagtcaatccaaacatgccctt 44638138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 55414370 - 55414326
Alignment:
Q  6 ttatgctagtagataagctcaaataagttaatccaaacaggccct 50  Q
    |||||| ||||||||  ||||||||||| ||||||||||||||||    
T  55414370 ttatgccagtagatactctcaaataagtcaatccaaacaggccct 55414326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 449960 - 450003
Alignment:
Q  6 ttatgctagtagataagctcaaataagttaatccaaacaggccc 49  Q
    |||||||||||||||||||||||||||||||| |||||| ||||    
T  449960 ttatgctagtagataagctcaaataagttaatgcaaacatgccc 450003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 28810414 - 28810363
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaacaggccctta 52  Q
    ||||||||||| | |||| |||||||||||||| ||||||||||||||||||    
T  28810414 agtgtttatgccaatagagaagctcaaataagtcaatccaaacaggccctta 28810363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 9996851 - 9996897
Alignment:
Q  6 ttatgctagtagataagctcaaataagttaatccaaacaggccctta 52  Q
    |||||||||| ||||||||||||||||| || |||||||||||||||    
T  9996851 ttatgctagttgataagctcaaataagtcaagccaaacaggccctta 9996897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 15120293 - 15120335
Alignment:
Q  3 tgtttatgctagtagataagctcaaataagttaatccaaacag 45  Q
    |||||||||||||||||||| |||||||||| |||||||||||    
T  15120293 tgtttatgctagtagataagttcaaataagtcaatccaaacag 15120335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 48
Target Start/End: Complemental strand, 15370280 - 15370238
Alignment:
Q  6 ttatgctagtagataagctcaaataagttaatccaaacaggcc 48  Q
    |||||| ||||||||||||||||||||| ||||||||||||||    
T  15370280 ttatgccagtagataagctcaaataagtcaatccaaacaggcc 15370238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 2964771 - 2964722
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaacaggccct 50  Q
    |||||||||||  ||||||||| ||||||||||||||||||||| |||||    
T  2964771 agtgtttatgccggtagataagttcaaataagttaatccaaacatgccct 2964722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 10563517 - 10563472
Alignment:
Q  6 ttatgctagtagataagctcaaataagttaatccaaacaggccctt 51  Q
    ||||||| ||||||||| |||||||||| |||||||||||||||||    
T  10563517 ttatgctggtagataagttcaaataagtcaatccaaacaggccctt 10563472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 6 - 45
Target Start/End: Original strand, 18179062 - 18179101
Alignment:
Q  6 ttatgctagtagataagctcaaataagttaatccaaacag 45  Q
    ||||| |||||||||||||||||||||| |||||||||||    
T  18179062 ttatgttagtagataagctcaaataagtcaatccaaacag 18179101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 33931532 - 33931481
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaacaggccctta 52  Q
    |||| |||||||| ||| |||||||||||||||||||||| |||| ||||||    
T  33931532 agtgcttatgctattaggtaagctcaaataagttaatccagacagaccctta 33931481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 35329780 - 35329737
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaaca 44  Q
    |||||||||| ||||||||||||||| |||||| ||||||||||    
T  35329780 agtgtttatggtagtagataagctcacataagtcaatccaaaca 35329737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 2790351 - 2790397
Alignment:
Q  6 ttatgctagtagataagctcaaataagttaatccaaacaggccctta 52  Q
    |||| |||||||||||| |||||||||  ||||||||||||||||||    
T  2790351 ttatactagtagataagttcaaataagccaatccaaacaggccctta 2790397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 26202151 - 26202185
Alignment:
Q  16 agataagctcaaataagttaatccaaacaggccct 50  Q
    ||||||| |||||||||||||||||||||||||||    
T  26202151 agataagttcaaataagttaatccaaacaggccct 26202185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 5043517 - 5043476
Alignment:
Q  6 ttatgctagtagataagctcaaataagttaatccaaacaggc 47  Q
    ||||||||||||||||| |||||||||| |||||||| ||||    
T  5043517 ttatgctagtagataaggtcaaataagtcaatccaaaaaggc 5043476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 7928246 - 7928209
Alignment:
Q  15 tagataagctcaaataagttaatccaaacaggccctta 52  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  7928246 tagataagctcaaataagccaatccaaacaggccctta 7928209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 27317500 - 27317533
Alignment:
Q  14 gtagataagctcaaataagttaatccaaacaggc 47  Q
    |||||||||||||||||||| |||||||||||||    
T  27317500 gtagataagctcaaataagtcaatccaaacaggc 27317533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 33503111 - 33503152
Alignment:
Q  6 ttatgctagtagataagctcaaataagttaatccaaacaggc 47  Q
    |||||||||||||||||||||||||||  ||| |||||||||    
T  33503111 ttatgctagtagataagctcaaataagccaatacaaacaggc 33503152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 37448734 - 37448693
Alignment:
Q  6 ttatgctagtagataagctcaaataagttaatccaaacaggc 47  Q
    ||||||| |||||||||||||||||||| |||| ||||||||    
T  37448734 ttatgctggtagataagctcaaataagtcaatctaaacaggc 37448693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 41170718 - 41170763
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaacagg 46  Q
    |||||||||| |||||||||| ||||||||||  ||||||||||||    
T  41170718 agtgtttatgttagtagataaactcaaataagccaatccaaacagg 41170763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 43259943 - 43259996
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaacaggcccttact 54  Q
    |||| ||||||||||||||||| |||||||||  ||||||||||  ||||||||    
T  43259943 agtgcttatgctagtagataagttcaaataagccaatccaaacaatcccttact 43259996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 42
Target Start/End: Complemental strand, 1633457 - 1633421
Alignment:
Q  6 ttatgctagtagataagctcaaataagttaatccaaa 42  Q
    |||||||||||||||| ||||||||||| ||||||||    
T  1633457 ttatgctagtagataaactcaaataagtaaatccaaa 1633421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 3078570 - 3078526
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaacag 45  Q
    ||||||| || | |||||||||||||||||||| |||||||||||    
T  3078570 agtgtttgtgttggtagataagctcaaataagtcaatccaaacag 3078526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 4607046 - 4607082
Alignment:
Q  14 gtagataagctcaaataagttaatccaaacaggccct 50  Q
    |||||||||||||||||||  ||||||||||||||||    
T  4607046 gtagataagctcaaataagccaatccaaacaggccct 4607082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 6772482 - 6772446
Alignment:
Q  14 gtagataagctcaaataagttaatccaaacaggccct 50  Q
    |||||||||||||||||||| |||||||||| |||||    
T  6772482 gtagataagctcaaataagtcaatccaaacatgccct 6772446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 24097917 - 24097961
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaacag 45  Q
    ||||||||| | |||||| |||||||||||| |||||||||||||    
T  24097917 agtgtttatccaagtagacaagctcaaataaattaatccaaacag 24097961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 30990401 - 30990357
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaacag 45  Q
    |||| ||||| |||||||||||||||||||||  |||||||||||    
T  30990401 agtgcttatgttagtagataagctcaaataagccaatccaaacag 30990357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 10199370 - 10199319
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaacaggccctta 52  Q
    |||| ||||| |||||||||||||||||||||| ||||||| ||||||||||    
T  10199370 agtgcttatgttagtagataagctcaaataagtcaatccaaccaggccctta 10199319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 52013996 - 52014039
Alignment:
Q  2 gtgtttatgctagtagataagctcaaataagttaatccaaacag 45  Q
    |||||||||| | |||||||||||||||||||||||||||||||    
T  52013996 gtgtttatgccaatagataagctcaaataagttaatccaaacag 52014039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 33723344 - 33723299
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaacagg 46  Q
    |||||||||| ||||||||||| |||||||||| ||||||||||||    
T  33723344 agtgtttatggtagtagataagttcaaataagtcaatccaaacagg 33723299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 2832080 - 2832120
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaa 41  Q
    |||| ||||||||||||||||||||||||||| ||||||||    
T  2832080 agtgcttatgctagtagataagctcaaataagctaatccaa 2832120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 2295311 - 2295350
Alignment:
Q  13 agtagataagctcaaataagttaatccaaacaggccctta 52  Q
    ||||||||||||||||||||  ||||||||||||||||||    
T  2295311 agtagataagctcaaataagccaatccaaacaggccctta 2295350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 44
Target Start/End: Complemental strand, 3319900 - 3319865
Alignment:
Q  9 tgctagtagataagctcaaataagttaatccaaaca 44  Q
    ||||||||||||||||||||||||| ||||||||||    
T  3319900 tgctagtagataagctcaaataagtcaatccaaaca 3319865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 6659788 - 6659830
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaac 43  Q
    |||| ||||||||||||||||||| |||||||| |||||||||    
T  6659788 agtgcttatgctagtagataagctaaaataagtcaatccaaac 6659830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 15477666 - 15477712
Alignment:
Q  6 ttatgctagtagataagctcaaataagttaatccaaacaggccctta 52  Q
    |||||| ||||||||||||| ||||||  ||||||||||||||||||    
T  15477666 ttatgcaagtagataagctctaataagccaatccaaacaggccctta 15477712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 30014035 - 30013997
Alignment:
Q  7 tatgctagtagataagctcaaataagttaatccaaacag 45  Q
    ||||||||||||||| ||||||||||| |||||||||||    
T  30014035 tatgctagtagataaactcaaataagtcaatccaaacag 30013997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 45
Target Start/End: Original strand, 37431858 - 37431888
Alignment:
Q  15 tagataagctcaaataagttaatccaaacag 45  Q
    |||||||||||||||||||||||||||||||    
T  37431858 tagataagctcaaataagttaatccaaacag 37431888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 48
Target Start/End: Complemental strand, 40304036 - 40303994
Alignment:
Q  6 ttatgctagtagataagctcaaataagttaatccaaacaggcc 48  Q
    |||||| ||||||||| || |||||||||||||||||||||||    
T  40304036 ttatgccagtagataatctgaaataagttaatccaaacaggcc 40303994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 42575427 - 42575389
Alignment:
Q  5 tttatgctagtagataagctcaaataagttaatccaaac 43  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  42575427 tttatgctagtagataagctcaaataaggcaatccaaac 42575389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 14128431 - 14128382
Alignment:
Q  3 tgtttatgctagtagataagctcaaataagttaatccaaacaggccctta 52  Q
    |||||||||||||||||||| ||| ||||  ||||||||||| |||||||    
T  14128431 tgtttatgctagtagataagttcacataatctaatccaaacaagccctta 14128382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 15558319 - 15558368
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaacaggccct 50  Q
    |||||||| || ||| ||||||||||||||| | ||||||||||||||||    
T  15558319 agtgtttaagccagtcgataagctcaaataactcaatccaaacaggccct 15558368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 21002268 - 21002313
Alignment:
Q  6 ttatgctagtagataagctcaaataagttaatccaaacaggccctt 51  Q
    |||||| ||||||||||||||||||||  |||||||||| ||||||    
T  21002268 ttatgcaagtagataagctcaaataagccaatccaaacaagccctt 21002313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 24460351 - 24460314
Alignment:
Q  13 agtagataagctcaaataagttaatccaaacaggccct 50  Q
    |||||||||| |||||||||| ||||||||||||||||    
T  24460351 agtagataagttcaaataagtcaatccaaacaggccct 24460314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 50644211 - 50644174
Alignment:
Q  7 tatgctagtagataagctcaaataagttaatccaaaca 44  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  50644211 tatgttagtagataagctcaaataagtcaatccaaaca 50644174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 1565100 - 1565064
Alignment:
Q  9 tgctagtagataagctcaaataagttaatccaaacag 45  Q
    ||||||||||||| |||||| ||||||||||||||||    
T  1565100 tgctagtagataatctcaaaaaagttaatccaaacag 1565064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 2522704 - 2522744
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaa 41  Q
    ||||||||||| ||||||||| ||||||||||| |||||||    
T  2522704 agtgtttatgccagtagataaactcaaataagtcaatccaa 2522744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 4276607 - 4276563
Alignment:
Q  6 ttatgctagtagataagctcaaataagttaatccaaacaggccct 50  Q
    |||||| || |||||||||||||||||| |||||||||| |||||    
T  4276607 ttatgccagaagataagctcaaataagtaaatccaaacatgccct 4276563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 7218036 - 7217988
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaacaggccc 49  Q
    |||||||||||  ||||||||||| |||||||| |||||||||| ||||    
T  7218036 agtgtttatgccggtagataagcttaaataagtcaatccaaacatgccc 7217988  T

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Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 15515665 - 15515701
Alignment:
Q  2 gtgtttatgctagtagataagctcaaataagttaatc 38  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  15515665 gtgtttatgccagtagataagctcaaataagtcaatc 15515701  T

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Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 29045888 - 29045852
Alignment:
Q  8 atgctagtagataagctcaaataagttaatccaaaca 44  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  29045888 atgctagtagataaactcaaataagtcaatccaaaca 29045852  T

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Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 36523233 - 36523201
Alignment:
Q  18 ataagctcaaataagttaatccaaacaggccct 50  Q
    ||||||| |||||||||||||||||||||||||    
T  36523233 ataagcttaaataagttaatccaaacaggccct 36523201  T

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Target: scaffold0020 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 159935 - 159887
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagttaatccaaacaggccc 49  Q
    |||||||||  |||||||||||||||||||||  |||||||||||||||    
T  159935 agtgtttatattagtagataagctcaaataagccaatccaaacaggccc 159887  T

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Target: scaffold0199 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 6918 - 6950
Alignment:
Q  1 agtgtttatgctagtagataagctcaaataagt 33  Q
    ||||||||||||||||||||| |||||||||||    
T  6918 agtgtttatgctagtagataaactcaaataagt 6950  T

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