View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7803_low_13 (Length: 338)
Name: NF7803_low_13
Description: NF7803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7803_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 59 - 325
Target Start/End: Original strand, 2337830 - 2338096
Alignment:
| Q |
59 |
taagctaatactcatggcacatctatatccaccaatctccgacacaaacacaatacaacctcatctaactataatggatttggttcttagtagcctaata |
158 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2337830 |
taagctaatactcatggcacatctatatccaccaatctcctacacaaacacaatacaacctcatctaactataatggatttggttcttagtagcctaata |
2337929 |
T |
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| Q |
159 |
aacggcacaacaattgcactcctttattttattcccctgtgtttgattctatttggattctcaaaagttgttcatagcaaaaataaagaggcgccaatag |
258 |
Q |
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||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2337930 |
aacggcacaactattgcactcctttattttattcccctatgtttgattctatttggattctcaaaagttgttcatagcaaaaataaagaggcgccaatag |
2338029 |
T |
|
| Q |
259 |
ccgaaggtgcatggccaatacttggtcatctctcactttttcgtggcacacaatctccccatagagt |
325 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2338030 |
ccgaaggtgcatggccaatacttggtcatctctcactttttcgtggcacacaatcaccccatagagt |
2338096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 59 - 322
Target Start/End: Original strand, 2305507 - 2305772
Alignment:
| Q |
59 |
taagctaatactcatggcacatctatatccaccaatctccgacacaaacacaatacaacctcatctaactataatggatttggttcttagtagcctaata |
158 |
Q |
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|||||||||||| ||||||||||||||||||| ||||||| ||| || ||||| |||||||| |||||||||||||||||| |||||||| | ||||||| |
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| T |
2305507 |
taagctaatactaatggcacatctatatccactaatctcctaca-aatcacaacacaacctcgtctaactataatggattttgttcttagcaacctaata |
2305605 |
T |
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| Q |
159 |
aacggcacaacaattgcactcctttattt---tattcccctgtgtttgattctatttggattctcaaaagttgttcatagcaaaaataaagaggcgccaa |
255 |
Q |
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||| ||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||| ||||||||||||||| |||||||| |||| |
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| T |
2305606 |
aactcaacaacaattgcactcctttatttcattattcccctatgtttgtttctatttggattctcaaaatttgttcatagcaaaaccaaagaggcaccaa |
2305705 |
T |
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| Q |
256 |
tagccgaaggtgcatggccaatacttggtcatctctcactttttcgtggcacacaatctccccatag |
322 |
Q |
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| T |
2305706 |
tagccgaaggtgcatggccaatacttggtcacctctcactttttagtggcacacaatcaccccatag |
2305772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 154 - 325
Target Start/End: Original strand, 2348971 - 2349145
Alignment:
| Q |
154 |
taataaacggcacaacaattgcactcct---ttattttattcccctgtgtttgattctatttggattctcaaaagttgttcatagcaaaaataaagaggc |
250 |
Q |
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||||||||| |||||||||||||||||| || | | |||||||| ||||| ||||||||||| |||||||| || ||| |||||||| ||||| || |
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| T |
2348971 |
taataaacgccacaacaattgcactcctaatttctctaattcccctatgtttatttctatttggactctcaaaattttctcacagcaaaaacaaagaagc |
2349070 |
T |
|
| Q |
251 |
gccaatagccgaaggtgcatggccaatacttggtcatctctcactttttcgtggcacacaatctccccatagagt |
325 |
Q |
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|| ||||| ||||||||||||||||||||||||| ||| || ||||| |||||| |||| | ||||| ||||| |
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| T |
2349071 |
acccatagctaaaggtgcatggccaatacttggtcacctcccaatttttagtggcaaacaaccaccccacagagt |
2349145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 206 - 323
Target Start/End: Complemental strand, 5806317 - 5806200
Alignment:
| Q |
206 |
tctatttggattctcaaaagttgttcatagcaaaaataaagaggcgccaatagccgaaggtgcatggccaatacttggtcatctctcactttttcgtggc |
305 |
Q |
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||||||||||||||| ||| ||| |||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||| ||| || ||||| ||||| |
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| T |
5806317 |
tctatttggattctctaaatttgctcatagcaaaaacaaagaggcaccaatagccaaaggtgcatggccaatacttggtcacctcccaattttttgtggc |
5806218 |
T |
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| Q |
306 |
acacaatctccccataga |
323 |
Q |
| |
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|||||| | ||||||||| |
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| T |
5806217 |
acacaagcaccccataga |
5806200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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