View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7803_low_17 (Length: 287)

Name: NF7803_low_17
Description: NF7803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7803_low_17
NF7803_low_17
[»] chr7 (30 HSPs)
chr7 (1-278)||(8537573-8537850)
chr7 (48-258)||(8609501-8609711)
chr7 (48-257)||(6789096-6789305)
chr7 (79-258)||(17267554-17267733)
chr7 (1-258)||(8590175-8590432)
chr7 (1-258)||(7878107-7878364)
chr7 (66-194)||(8575928-8576056)
chr7 (79-278)||(27831229-27831428)
chr7 (66-258)||(10494748-10494940)
chr7 (79-258)||(17259856-17260035)
chr7 (65-165)||(13333835-13333935)
chr7 (49-168)||(8581285-8581404)
chr7 (89-242)||(29582231-29582384)
chr7 (48-168)||(8545217-8545337)
chr7 (66-258)||(8654052-8654244)
chr7 (48-168)||(3146848-3146968)
chr7 (48-168)||(29578136-29578256)
chr7 (68-258)||(8667023-8667213)
chr7 (1-258)||(8569848-8570105)
chr7 (83-168)||(27846570-27846655)
chr7 (42-166)||(8586172-8586296)
chr7 (118-257)||(8102321-8102460)
chr7 (66-165)||(8658965-8659064)
chr7 (48-146)||(8558967-8559065)
chr7 (112-258)||(8636717-8636863)
chr7 (212-267)||(8601722-8601777)
chr7 (118-168)||(39985300-39985350)
chr7 (48-101)||(8616262-8616315)
chr7 (214-258)||(8576076-8576120)
chr7 (214-258)||(8581450-8581494)
[»] chr8 (2 HSPs)
chr8 (49-278)||(12528089-12528318)
chr8 (48-162)||(43744400-43744514)
[»] chr5 (1 HSPs)
chr5 (48-168)||(28219502-28219622)
[»] chr2 (7 HSPs)
chr2 (48-170)||(43624996-43625118)
chr2 (66-258)||(16657891-16658083)
chr2 (66-168)||(16662456-16662558)
chr2 (50-168)||(7541812-7541930)
chr2 (48-168)||(14702992-14703112)
chr2 (48-278)||(11998992-11999221)
chr2 (110-278)||(12245760-12245928)
[»] chr1 (3 HSPs)
chr1 (28-168)||(15594598-15594738)
chr1 (66-267)||(4678922-4679123)
chr1 (66-278)||(34467142-34467354)
[»] chr4 (5 HSPs)
chr4 (48-258)||(35132040-35132250)
chr4 (68-267)||(30774856-30775055)
chr4 (66-165)||(9336358-9336457)
chr4 (107-186)||(23597031-23597110)
chr4 (128-162)||(54396087-54396121)


Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 8537573 - 8537850
Alignment:
Q  1 agtgttccttggaatcagtatatccatgatatctccactaactgaggtaccaagagacagaggtataacatctcgcagcaccaagttcggaacagtctta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8537573 agtgttccttggaatcagtatatccatgatatctccactaactgaggtaccaagagacagaggtataacatctcgcagcaccaagttcggaacagtctta 8537672  T
Q  101 atgcctccgctcaacaaagcagcctggacagcagcaccataagcaacagcttcatcagggttgatgcttttaaaaatatccttccccctgaaaaagtttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8537673 atgcctccgctcaacaaagcagcctggacagcagcaccataagcaacagcttcatcagggttgatgcttttaaaaatatccttccccctgaaaaagtttt 8537772  T
Q  201 gcagcagactctgcactttgggaatcctagaagagccaccaactagtacaacatcatccatactactgatgtccatct 278  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  8537773 gcagcagactctgcactttgggaatcctagaagagccaccaactagtacaacatcatccatactactactgtccatct 8537850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 48 - 258
Target Start/End: Original strand, 8609501 - 8609711
Alignment:
Q  48 taccaagagacagaggtataacatctcgcagcaccaagttcggaacagtcttaatgcctccgctcaacaaagcagcctggacagcagcaccataagcaac 147  Q
    ||||||| |||| |||| |||||||||||||||||||||| ||||| |  || |||||| | | ||||||||||||||||||||||||||||||||||||    
T  8609501 taccaagtgacaaaggtgtaacatctcgcagcaccaagtttggaactgatttgatgccttcacccaacaaagcagcctggacagcagcaccataagcaac 8609600  T
Q  148 agcttcatcagggttgatgcttttaaaaatatccttccccctgaaaaagttttgcagcagactctgcactttgggaatcctagaagagccaccaactagt 247  Q
     || |||||||||||||||||  || | | |||||| ||  ||||||||| |||||| ||   || |||||| |||||||||||||| || ||||| ||     
T  8609601 cgcctcatcagggttgatgctcatacacaaatcctttccattgaaaaagtcttgcagtagctgcttcactttcggaatcctagaagaacctccaacaaga 8609700  T
Q  248 acaacatcatc 258  Q
    |||||||||||    
T  8609701 acaacatcatc 8609711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 48 - 257
Target Start/End: Original strand, 6789096 - 6789305
Alignment:
Q  48 taccaagagacagaggtataacatctcgcagcaccaagttcggaacagtcttaatgcctccgctcaacaaagcagcctggacagcagcaccataagcaac 147  Q
    ||||||||||||  ||| |||||||| ||||||||||||| |||||| |||||  |||| ||||||||||||||||||||||||| ||||| ||||||||    
T  6789096 taccaagagacaacggtgtaacatcttgcagcaccaagtttggaacactcttagagccttcgctcaacaaagcagcctggacagctgcaccgtaagcaac 6789195  T
Q  148 agcttcatcagggttgatgcttttaaaaatatccttccccctgaaaaagttttgcagcagactctgcactttgggaatcctagaagagccaccaactagt 247  Q
    ||| |||||||||||||||||  |  | | |||||| ||| ||||||  | |||||  ||    |||||||||||||| |||||||| |||||||| ||     
T  6789196 agcctcatcagggttgatgctcatgcacaaatcctttcccatgaaaacttcttgcaatagttgttgcactttgggaattctagaagacccaccaacaagg 6789295  T
Q  248 acaacatcat 257  Q
    ||||||||||    
T  6789296 acaacatcat 6789305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 79 - 258
Target Start/End: Original strand, 17267554 - 17267733
Alignment:
Q  79 caccaagttcggaacagtcttaatgcctccgctcaacaaagcagcctggacagcagcaccataagcaacagcttcatcagggttgatgcttttaaaaata 178  Q
    ||||||||| |||||| |||| | || ||| || |||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||  | |      
T  17267554 caccaagtttggaacattcttgacgcttccacttaacaaagcagcctgaacagcagcaccataagcaacagcctcatcagggttgatacttttgcataat 17267653  T
Q  179 tccttccccctgaaaaagttttgcagcagactctgcactttgggaatcctagaagagccaccaactagtacaacatcatc 258  Q
    ||||||||| |||| ||||| ||||  ||   ||||||||| |||||||||||||| |||||||| || |||||||||||    
T  17267654 tccttccccttgaagaagttctgcaatagttgctgcactttcggaatcctagaagacccaccaacaaggacaacatcatc 17267733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 8590175 - 8590432
Alignment:
Q  1 agtgttccttggaatcagtatatccatgatatctccactaactgaggtaccaagagacagaggtataacatctcgcagcaccaagttcggaacagtctta 100  Q
    ||||||| | ||||||| || ||||||||||||  ||   | ||| |||||||||||||  ||  |||||||| | |||||||| || |||||| |||||    
T  8590175 agtgttcttaggaatcactacatccatgatatcatcatatattgacgtaccaagagacaatggagtaacatcttgtagcaccaaattaggaacattctta 8590274  T
Q  101 atgcctccgctcaacaaagcagcctggacagcagcaccataagcaacagcttcatcagggttgatgcttttaaaaatatccttccccctgaaaaagtttt 200  Q
    || ||  | |  | ||||||||| || ||||| ||||||||||||||||| ||||| || |||||||| ||  ||| |||||||||| | ||||||| ||    
T  8590275 atcccatcacaaagcaaagcagcttgaacagctgcaccataagcaacagcctcatctggattgatgctattgtaaagatccttccccataaaaaagtctt 8590374  T
Q  201 gcagcagactctgcactttgggaatcctagaagagccaccaactagtacaacatcatc 258  Q
    |||  ||   |||||||||||||||||||||||| |||||||| ||||||||||||||    
T  8590375 gcaatagctgctgcactttgggaatcctagaagaaccaccaacaagtacaacatcatc 8590432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 7878364 - 7878107
Alignment:
Q  1 agtgttccttggaatcagtatatccatgatatctccactaactgaggtaccaagagacagaggtataacatctcgcagcaccaagttcggaacagtctta 100  Q
    ||||||| | ||||||| || ||||||||||||  ||   ||||| || ||||||||||  ||  |||||||| ||| |||||| || |||||| |||||    
T  7878364 agtgttcttaggaatcactacatccatgatatcgtcaagtactgacgtgccaagagacaatggagtaacatcttgcaacaccaaattaggaacattctta 7878265  T
Q  101 atgcctccgctcaacaaagcagcctggacagcagcaccataagcaacagcttcatcagggttgatgcttttaaaaatatccttccccctgaaaaagtttt 200  Q
    || ||  | |  | || ||||||||| ||||| ||||||||||||||||||||||| |||||||||||  |  |||||||||||||| | |||||||  |    
T  7878264 ataccatcacaaagcagagcagcctgaacagctgcaccataagcaacagcttcatccgggttgatgctactgcaaatatccttccccttaaaaaagtcct 7878165  T
Q  201 gcagcagactctgcactttgggaatcctagaagagccaccaactagtacaacatcatc 258  Q
    |||  ||   |||||||||| |||||||||| || |||||||| ||||||||||||||    
T  7878164 gcaatagctgctgcactttgagaatcctagatgatccaccaacaagtacaacatcatc 7878107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 66 - 194
Target Start/End: Original strand, 8575928 - 8576056
Alignment:
Q  66 taacatctcgcagcaccaagttcggaacagtcttaatgcctccgctcaacaaagcagcctggacagcagcaccataagcaacagcttcatcagggttgat 165  Q
    |||||||||| | ||||||||| |||||| ||||| ||||| | |||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||    
T  8575928 taacatctcgtaacaccaagtttggaacattcttactgccttcactcaacaaagcagcttggacaacagcaccataagcaacagcctcatcagggttgat 8576027  T
Q  166 gcttttaaaaatatccttccccctgaaaa 194  Q
    ||| ||| | |  ||||||||| ||||||    
T  8576028 gctcttacataattccttccccttgaaaa 8576056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 79 - 278
Target Start/End: Complemental strand, 27831428 - 27831229
Alignment:
Q  79 caccaagttcggaacagtcttaatgcctccgctcaacaaagcagcctggacagcagcaccataagcaacagcttcatcagggttgatgcttttaaaaata 178  Q
    ||||||||| |||||| || ||||| |  | ||||||||||||||||| ||||| |||||| |||||||||| |||||||| |||||||| ||  | | |    
T  27831428 caccaagtttggaacattcataatgtcatcactcaacaaagcagcctgcacagctgcaccaaaagcaacagcctcatcaggattgatgctcttgcacaaa 27831329  T
Q  179 tccttccccctgaaaaagttttgcagcagactctgcactttgggaatcctagaagagccaccaactagtacaacatcatccatactactgatgtccatct 278  Q
    ||||| ||| |||||||||    ||  ||   |||||||||||||||||| |||||||||||||| || ||||||||||| ||||||||  |||||||||    
T  27831328 tcctttcccttgaaaaagtccgccaatagctgctgcactttgggaatccttgaagagccaccaacaaggacaacatcatctatactactcttgtccatct 27831229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 66 - 258
Target Start/End: Complemental strand, 10494940 - 10494748
Alignment:
Q  66 taacatctcgcagcaccaagttcggaacagtcttaatgcctccgctcaacaaagcagcctggacagcagcaccataagcaacagcttcatcagggttgat 165  Q
    |||||||||| |||||||||||||| ||| |||||| |||| | ||||| | ||||||||| ||||| ||||||||||||||||| ||||| ||||||||    
T  10494940 taacatctcgtagcaccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgat 10494841  T
Q  166 gcttttaaaaatatccttccccctgaaaaagttttgcagcagactctgcactttgggaatcctagaagagccaccaactagtacaacatcatc 258  Q
     |   | || |  ||||||||| ||||||| | | |||  |||  ||||||||||||||||||||| |||||||| || || |||| ||||||    
T  10494840 acgcatgaataattccttccccttgaaaaattctagcaatagatcctgcactttgggaatcctagacgagccacccacaagaacaatatcatc 10494748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 79 - 258
Target Start/End: Original strand, 17259856 - 17260035
Alignment:
Q  79 caccaagttcggaacagtcttaatgcctccgctcaacaaagcagcctggacagcagcaccataagcaacagcttcatcagggttgatgcttttaaaaata 178  Q
    ||||||||| |||||| |||| | || ||| || |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||  | |      
T  17259856 caccaagtttggaacattcttgacgcttccacttaacaaagcagcctgaacagcagcaccataagcaacagcctcatcagggttgatgctcttgcataat 17259955  T
Q  179 tccttccccctgaaaaagttttgcagcagactctgcactttgggaatcctagaagagccaccaactagtacaacatcatc 258  Q
    ||||| ||| |||| || |  ||||  ||   ||||||||| |||||||||||||| |||||||| || |||||||||||    
T  17259956 tccttacccttgaagaaatcctgcaatagttgctgcactttcggaatcctagaagatccaccaacaaggacaacatcatc 17260035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 65 - 165
Target Start/End: Complemental strand, 13333935 - 13333835
Alignment:
Q  65 ataacatctcgcagcaccaagttcggaacagtcttaatgcctccgctcaacaaagcagcctggacagcagcaccataagcaacagcttcatcagggttga 164  Q
    ||||||||||| |||||||||||||| |||||||||| |||| | ||||| | ||||||||| ||||| ||||||||||||||||| ||||| |||||||    
T  13333935 ataacatctcgtagcaccaagttcgggacagtcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttga 13333836  T
Q  165 t 165  Q
    |    
T  13333835 t 13333835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 49 - 168
Target Start/End: Original strand, 8581285 - 8581404
Alignment:
Q  49 accaagagacagaggtataacatctcgcagcaccaagttcggaacagtcttaatgcctccgctcaacaaagcagcctggacagcagcaccataagcaaca 148  Q
    |||||| ||||  ||| ||||||||||||  | |||||| |||||| ||||||||||| | || | |||||||||||| | |||||||||||||||||||    
T  8581285 accaagtgacaatggtgtaacatctcgcaaaatcaagtttggaacactcttaatgccttcactaaccaaagcagcctgaatagcagcaccataagcaaca 8581384  T
Q  149 gcttcatcagggttgatgct 168  Q
    || |||||||||||||||||    
T  8581385 gcctcatcagggttgatgct 8581404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 89 - 242
Target Start/End: Complemental strand, 29582384 - 29582231
Alignment:
Q  89 ggaacagtcttaatgcctccgctcaacaaagcagcctggacagcagcaccataagcaacagcttcatcagggttgatgcttttaaaaatatccttccccc 188  Q
    |||||| ||| ||||||| |  ||| |||||||||||| ||||| ||||||||||||||||| |||||||||||||||||  |  | | ||||||||||     
T  29582384 ggaacattctcaatgccttcaatcagcaaagcagcctgcacagctgcaccataagcaacagcctcatcagggttgatgctcatgcacaaatccttcccct 29582285  T
Q  189 tgaaaaagttttgcagcagactctgcactttgggaatcctagaagagccaccaa 242  Q
    ||||||| | |||||  ||    |||||||||||||| ||||||||||||||||    
T  29582284 tgaaaaattcttgcaatagctgatgcactttgggaattctagaagagccaccaa 29582231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 168
Target Start/End: Original strand, 8545217 - 8545337
Alignment:
Q  48 taccaagagacagaggtataacatctcgcagcaccaagttcggaacagtcttaatgcctccgctcaacaaagcagcctggacagcagcaccataagcaac 147  Q
    ||||||| |||| |||  |||||||||| ||||||| ||| || ||| ||||| || || | |||| |||||||||||||||||| ||||||||||||||    
T  8545217 taccaagtgacaaaggggtaacatctcgtagcaccatgtttgggacattcttattgtcttcactcagcaaagcagcctggacagctgcaccataagcaac 8545316  T
Q  148 agcttcatcagggttgatgct 168  Q
    ||| ||||||||||| |||||    
T  8545317 agcctcatcagggttaatgct 8545337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 258
Target Start/End: Original strand, 8654052 - 8654244
Alignment:
Q  66 taacatctcgcagcaccaagttcggaacagtcttaatgcctccgctcaacaaagcagcctggacagcagcaccataagcaacagcttcatcagggttgat 165  Q
    ||||||| || ||||||||||| || ||| |||||| | || | ||||| | ||||||||| |||||||| ||||| |||| ||| ||||| ||||||||    
T  8654052 taacatcacgtagcaccaagttggggacattcttaaagtcttcactcaaaatagcagcctgaacagcagcgccatatgcaatagcctcatctgggttgat 8654151  T
Q  166 gcttttaaaaatatccttccccctgaaaaagttttgcagcagactctgcactttgggaatcctagaagagccaccaactagtacaacatcatc 258  Q
      |  |||| | | |||||||| ||||||| | | |||  |||  ||||||||||||||||||||| |||||||| || ||||||||||||||    
T  8654152 attcataaacaaagccttccccttgaaaaactctagcaatagatcctgcactttgggaatcctagacgagccacccacgagtacaacatcatc 8654244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 48 - 168
Target Start/End: Original strand, 3146848 - 3146968
Alignment:
Q  48 taccaagagacagaggtataacatctcgcagcaccaagttcggaacagtcttaatgcctccgctcaacaaagcagcctggacagcagcaccataagcaac 147  Q
    |||||||||||| |||   ||||||| ||| ||||||||| |||||| | |||| | || | |||||||||||||| || ||||| ||||||||||||||    
T  3146848 taccaagagacaaaggagcaacatcttgcaccaccaagtttggaacatttttaaagtcttcactcaacaaagcagcttgcacagctgcaccataagcaac 3146947  T
Q  148 agcttcatcagggttgatgct 168  Q
     || |||||||||||||||||    
T  3146948 ggcctcatcagggttgatgct 3146968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 168
Target Start/End: Complemental strand, 29578256 - 29578136
Alignment:
Q  48 taccaagagacagaggtataacatctcgcagcaccaagttcggaacagtcttaatgcctccgctcaacaaagcagcctggacagcagcaccataagcaac 147  Q
    ||||||| ||||  ||| ||| ||||||||  ||||| || |||||| ||||||||||  |  |||||||||||||||| ||||| ||||||||||||||    
T  29578256 taccaagcgacaagggtgtaatatctcgcaagaccaaatttggaacattcttaatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaac 29578157  T
Q  148 agcttcatcagggttgatgct 168  Q
    ||| || |||||||| |||||    
T  29578156 agcctcgtcagggtttatgct 29578136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 258
Target Start/End: Original strand, 8667023 - 8667213
Alignment:
Q  68 acatctcgcagcaccaagttcggaacagtcttaatgcctccgctcaacaaagcagcctggacagcagcaccataagcaacagcttcatcagggttgatgc 167  Q
    |||||||| ||||||||||| || ||| |||||  |||| | ||||| | ||||||||| ||||| ||||||||||||||||| || || |||||||| |    
T  8667023 acatctcgtagcaccaagttggggacattcttacagccttcactcaaaatagcagcctgaacagctgcaccataagcaacagcctcgtctgggttgatac 8667122  T
Q  168 ttttaaaaatatccttccccctgaaaaagttttgcagcagactctgcactttgggaatcctagaagagccaccaactagtacaacatcatc 258  Q
       | || |  ||||||||| ||||| | | | |||   |   ||||||||||||||||||||| |||||||| || ||||||||||||||    
T  8667123 ccatgaataattccttccccttgaaatattctagcaattgttcctgcactttgggaatcctagacgagccaccgacaagtacaacatcatc 8667213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 8569848 - 8570105
Alignment:
Q  1 agtgttccttggaatcagtatatccatgatatctccactaactgaggtaccaagagacagaggtataacatctcgcagcaccaagttcggaacagtctta 100  Q
    |||||||||||||||||  | |  ||| |||||||| |||| ||||  |||||| ||||  ||| ||||||||||||  |||||||| |||||| |||||    
T  8569848 agtgttccttggaatcaccacactcataatatctcccctaattgagacaccaagtgacaatggtgtaacatctcgcaaaaccaagtttggaacactctta 8569947  T
Q  101 atgcctccgctcaacaaagcagcctggacagcagcaccataagcaacagcttcatcagggttgatgcttttaaaaatatccttccccctgaaaaagtttt 200  Q
    | || | | ||   |||| ||||||| | ||| ||||| ||||||||||| ||||||||||| ||||| ||  | |  |||||||||  |||||| | ||    
T  8569948 acgctttcactatgcaaaacagcctgaatagctgcaccgtaagcaacagcctcatcagggttaatgctgttgcataattccttcccctggaaaaactctt 8570047  T
Q  201 gcagcagactctgcactttgggaatcctagaagagccaccaactagtacaacatcatc 258  Q
    | |  ||   |  |||||| |||||||||||||| |||||||| || |||||||||||    
T  8570048 gtaatagctgcctcactttaggaatcctagaagaaccaccaacaaggacaacatcatc 8570105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 83 - 168
Target Start/End: Complemental strand, 27846655 - 27846570
Alignment:
Q  83 aagttcggaacagtcttaatgcctccgctcaacaaagcagcctggacagcagcaccataagcaacagcttcatcagggttgatgct 168  Q
    ||||| |||||| |||||||| |  | ||||||||||||||||| ||||| || ||| |||||||||| |||||||||||||||||    
T  27846655 aagtttggaacattcttaatgtcatcactcaacaaagcagcctgcacagctgctccaaaagcaacagcctcatcagggttgatgct 27846570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 42 - 166
Target Start/End: Complemental strand, 8586296 - 8586172
Alignment:
Q  42 ctgaggtaccaagagacagaggtataacatctcgcagcaccaagttcggaacagtcttaatgcctccgctcaacaaagcagcctggacagcagcaccata 141  Q
    ||||| ||||||| ||||||||  |||||||||||||||||||||| |||||  |||||| | ||   | || ||||| |||||| || ||||| |||      
T  8586296 ctgagataccaagtgacagaggggtaacatctcgcagcaccaagtttggaactttcttaaagtctttacacagcaaagaagcctgaactgcagccccact 8586197  T
Q  142 agcaacagcttcatcagggttgatg 166  Q
    ||||||||| |||||||| ||||||    
T  8586196 agcaacagcctcatcaggattgatg 8586172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 118 - 257
Target Start/End: Original strand, 8102321 - 8102460
Alignment:
Q  118 agcagcctggacagcagcaccataagcaacagcttcatcagggttgatgcttttaaaaatatccttccccctgaaaaagttttgcagcagactctgcact 217  Q
    |||||| || ||||| ||||||||||||||||| || || ||||||||||||||  | |  ||||| ||  |||| |||| ||||| |||   ||| |||    
T  8102321 agcagcttgaacagcggcaccataagcaacagcctcgtcggggttgatgcttttgcatagctccttaccattgaagaagtcttgcaacagttgctgaact 8102420  T
Q  218 ttgggaatcctagaagagccaccaactagtacaacatcat 257  Q
    |||||||||||||  || |||||||| || ||||||||||    
T  8102421 ttgggaatcctagttgaaccaccaacaagaacaacatcat 8102460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 165
Target Start/End: Original strand, 8658965 - 8659064
Alignment:
Q  66 taacatctcgcagcaccaagttcggaacagtcttaatgcctccgctcaacaaagcagcctggacagcagcaccataagcaacagcttcatcagggttgat 165  Q
    |||||||| ||||||||||||| || ||| |||||| ||||  ||| || | |||||| || | ||| ||||||||||||||||| ||||| ||||||||    
T  8658965 taacatcttgcagcaccaagtttgggacattcttaaagcctttgcttaaaacagcagcttgaagagctgcaccataagcaacagcctcatctgggttgat 8659064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 146
Target Start/End: Original strand, 8558967 - 8559065
Alignment:
Q  48 taccaagagacagaggtataacatctcgcagcaccaagttcggaacagtcttaatgcctccgctcaacaaagcagcctggacagcagcaccataagcaa 146  Q
    ||||||| |||| |||  ||||||||| |||||||| ||| |||||| ||||| || || | || | |||| ||||||||||||| |||||||||||||    
T  8558967 taccaagggacaaaggggtaacatctctcagcaccatgtttggaacattcttagtgtcttcactaagcaaaacagcctggacagctgcaccataagcaa 8559065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 258
Target Start/End: Complemental strand, 8636863 - 8636717
Alignment:
Q  112 caacaaagcagcctggacagcagcaccataagcaacagcttcatcagggttgatgcttttaaaaatatccttccccctgaaaaagttttgcagcagactc 211  Q
    |||||| ||||||||||| || || |||||||||||||| ||||||| ||||||||| ||| | |  |||||| || | |||| ||  || |  ||   |    
T  8636863 caacaatgcagcctggactgctgctccataagcaacagcctcatcagcgttgatgctcttacacagttccttcgccttaaaaatgtcctgtaatagttgc 8636764  T
Q  212 tgcactttgggaatcctagaagagccaccaactagtacaacatcatc 258  Q
    ||||| || ||||||||||| ||||||||||| || |||||||||||    
T  8636763 tgcacctttggaatcctagaggagccaccaacaaggacaacatcatc 8636717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 267
Target Start/End: Original strand, 8601722 - 8601777
Alignment:
Q  212 tgcactttgggaatcctagaagagccaccaactagtacaacatcatccatactact 267  Q
    ||||||||||||||||||||||| || ||||| || ||| ||||||||| ||||||    
T  8601722 tgcactttgggaatcctagaagaaccgccaacaaggacagcatcatccacactact 8601777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 168
Target Start/End: Original strand, 39985300 - 39985350
Alignment:
Q  118 agcagcctggacagcagcaccataagcaacagcttcatcagggttgatgct 168  Q
    ||||||||| |||||||||||||| |||||||| |||||||| || |||||    
T  39985300 agcagcctgaacagcagcaccatatgcaacagcctcatcaggatttatgct 39985350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 8616262 - 8616315
Alignment:
Q  48 taccaagagacagaggtataacatctcgcagcaccaagttcggaacagtcttaa 101  Q
    ||||||| ||||||||  |||||||||||||| ||||||| |||||| ||||||    
T  8616262 taccaagtgacagaggggtaacatctcgcagcgccaagtttggaacattcttaa 8616315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 8576076 - 8576120
Alignment:
Q  214 cactttgggaatcctagaagagccaccaactagtacaacatcatc 258  Q
    |||||| |||||||||||||| |||||||| || |||||||||||    
T  8576076 cactttaggaatcctagaagaaccaccaacaaggacaacatcatc 8576120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 8581450 - 8581494
Alignment:
Q  214 cactttgggaatcctagaagagccaccaactagtacaacatcatc 258  Q
    |||||| |||||||||||||| |||||||| || |||||||||||    
T  8581450 cactttaggaatcctagaagaaccaccaacaaggacaacatcatc 8581494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 49 - 278
Target Start/End: Original strand, 12528089 - 12528318
Alignment:
Q  49 accaagagacagaggtataacatctcgcagcaccaagttcggaacagtcttaatgcctccgctcaacaaagcagcctggacagcagcaccataagcaaca 148  Q
    ||||||||||| ||||||||||||| |||||  ||  |||||||||||||| |||||| | ||||||||||||||||| ||||| |||||||||||||||    
T  12528089 accaagagacaaaggtataacatcttgcagcgtcactttcggaacagtcttcatgccttcactcaacaaagcagcctgaacagcggcaccataagcaaca 12528188  T
Q  149 gcttcatcagggttgatgcttttaaaaatatccttccccctgaaaaagttttgcagcagactctgcactttgggaatcctagaagagccaccaactagta 248  Q
    || ||||||||||||||||| ||  | |  ||||| ||| ||||||| |  ||||  ||   || |||||||||||||||||| ||||||||||| ||||    
T  12528189 gcctcatcagggttgatgctcttgtataactccttgcccttgaaaaactcctgcaatagctgcttcactttgggaatcctagacgagccaccaacaagta 12528288  T
Q  249 caacatcatccatactactgatgtccatct 278  Q
    ||| |||||| | ||||||  |||||||||    
T  12528289 caatatcatctacactactcttgtccatct 12528318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 162
Target Start/End: Original strand, 43744400 - 43744514
Alignment:
Q  48 taccaagagacagaggtataacatctcgcagcaccaagttcggaacagtcttaatgcctccgctcaacaaagcagcctggacagcagcaccataagcaac 147  Q
    |||||||||| | ||||  ||||||| ||||||||| ||| |||||  | |||| |||| | ||||||||||||||||| ||||| ||||||  ||||||    
T  43744400 taccaagagaaaaaggtgcaacatcttgcagcaccacgtttggaacttttttaaagccttcactcaacaaagcagcctgcacagctgcaccaatagcaac 43744499  T
Q  148 agcttcatcagggtt 162  Q
     || |||||||||||    
T  43744500 tgcctcatcagggtt 43744514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 48 - 168
Target Start/End: Original strand, 28219502 - 28219622
Alignment:
Q  48 taccaagagacagaggtataacatctcgcagcaccaagttcggaacagtcttaatgcctccgctcaacaaagcagcctggacagcagcaccataagcaac 147  Q
    |||||||||||| |||| |||||||| |||||||||| ||||||||  | |||| |||| | ||||||||||||||||| ||||| ||||||||||||||    
T  28219502 taccaagagacaaaggtgtaacatcttgcagcaccaacttcggaacttttttaaagccttcactcaacaaagcagcctgcacagctgcaccataagcaac 28219601  T
Q  148 agcttcatcagggttgatgct 168  Q
    ||| ||||||||||| |||||    
T  28219602 agcctcatcagggttaatgct 28219622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 48 - 170
Target Start/End: Original strand, 43624996 - 43625118
Alignment:
Q  48 taccaagagacagaggtataacatctcgcagcaccaagttcggaacagtcttaatgcctccgctcaacaaagcagcctggacagcagcaccataagcaac 147  Q
    ||||||| |||| |||  ||||||||||||||||||| || |||||| |||||||||||   ||||| | ||||||||||||||| ||||||||||||||    
T  43624996 taccaagtgacaaaggggtaacatctcgcagcaccaattttggaacattcttaatgcctttactcaaaatagcagcctggacagctgcaccataagcaac 43625095  T
Q  148 agcttcatcagggttgatgcttt 170  Q
    ||| ||||||||||| |||||||    
T  43625096 agcctcatcagggtttatgcttt 43625118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 66 - 258
Target Start/End: Complemental strand, 16658083 - 16657891
Alignment:
Q  66 taacatctcgcagcaccaagttcggaacagtcttaatgcctccgctcaacaaagcagcctggacagcagcaccataagcaacagcttcatcagggttgat 165  Q
    ||||||||| || |||||| |  || ||| |||||| |||| | ||||| | |||||| || ||||| ||||| ||||||||||||||||| ||||||||    
T  16658083 taacatctctcaacaccaaatctgggacattcttaaagccttcactcaaaatagcagcttgaacagctgcaccgtaagcaacagcttcatccgggttgat 16657984  T
Q  166 gcttttaaaaatatccttccccctgaaaaagttttgcagcagactctgcactttgggaatcctagaagagccaccaactagtacaacatcatc 258  Q
     |||||  | | |||||| ||| ||||||||| |||||  |||  ||||||||||||||||||||| |||||||| || || ||||| |||||    
T  16657983 acttttgcataaatccttgcccttgaaaaagtcttgcaatagatcctgcactttgggaatcctagatgagccacccacaagaacaacgtcatc 16657891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 66 - 168
Target Start/End: Complemental strand, 16662558 - 16662456
Alignment:
Q  66 taacatctcgcagcaccaagttcggaacagtcttaatgcctccgctcaacaaagcagcctggacagcagcaccataagcaacagcttcatcagggttgat 165  Q
    |||| ||||||||||||||||| ||||||  |||||||||| | ||||||| |||||| || ||||| || |||||||||||||| ||||||||||||||    
T  16662558 taacgtctcgcagcaccaagtttggaacatccttaatgccttcactcaacacagcagcttgcacagctgccccataagcaacagcctcatcagggttgat 16662459  T
Q  166 gct 168  Q
    |||    
T  16662458 gct 16662456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 50 - 168
Target Start/End: Original strand, 7541812 - 7541930
Alignment:
Q  50 ccaagagacagaggtataacatctcgcagcaccaagttcggaacagtcttaatgcctccgctcaacaaagcagcctggacagcagcaccataagcaacag 149  Q
    |||||||||| |||| |||||||  |||||||||| || ||| |  |||||| |||||| |||||||| |||||||| ||||| || |||||||||||||    
T  7541812 ccaagagacaaaggtgtaacatcctgcagcaccaactttggagcgttcttaacgcctccactcaacaatgcagcctgaacagctgccccataagcaacag 7541911  T
Q  150 cttcatcagggttgatgct 168  Q
    | |||||||| || |||||    
T  7541912 cctcatcaggattaatgct 7541930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 168
Target Start/End: Original strand, 14702992 - 14703112
Alignment:
Q  48 taccaagagacagaggtataacatctcgcagcaccaagttcggaacagtcttaatgcctccgctcaacaaagcagcctggacagcagcaccataagcaac 147  Q
    |||| ||||||| |||| ||| |||  | |||||||| ||||||||| |||| | | || | ||||||||||||||||| ||||| || |||||||| ||    
T  14702992 tacctagagacaaaggtgtaatatcctgaagcaccaacttcggaacattcttgacgtcttcactcaacaaagcagcctgaacagctgccccataagctac 14703091  T
Q  148 agcttcatcagggttgatgct 168  Q
    ||||||||||||||| |||||    
T  14703092 agcttcatcagggttaatgct 14703112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 278
Target Start/End: Original strand, 11998992 - 11999221
Alignment:
Q  48 taccaagagacagaggtataacatctcgcagcaccaagttcggaacagtcttaatgcctccgctcaacaaagcagcctggacagcagcaccataagcaac 147  Q
    |||||||||||| |||  |||||||  ||| |||||| || |||||| ||||||   || | |||||||||||||| || ||||| || |||||||| ||    
T  11998992 taccaagagacaaaggagtaacatcctgcaacaccaaatttggaacattcttaacatcttcactcaacaaagcagcttgaacagctgccccataagctac 11999091  T
Q  148 agcttcatcagggttgatgcttttaaaaatatccttccccctgaaaaagttttgcagcagactctgcactttgggaatcctagaagagccaccaactagt 247  Q
    ||| ||||||||||| ||||| ||  | |  ||||||||  |||||||||  || |  ||    || |||||||| ||||||||||| |||||||| |||    
T  11999092 agcctcatcagggttaatgctcttgcacaactccttcccgttgaaaaagtcatgtaatagctgttggactttggg-atcctagaagatccaccaacaagt 11999190  T
Q  248 acaacatcatccatactactgatgtccatct 278  Q
    ||||||||||| ||| ||||  |||||||||    
T  11999191 acaacatcatctatagtactcttgtccatct 11999221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 278
Target Start/End: Complemental strand, 12245928 - 12245760
Alignment:
Q  110 ctcaacaaagcagcctggacagcagcaccataagcaacagcttcatcagggttgatgcttttaaaaatatccttccccctgaaaaagttttgcagcagac 209  Q
    |||||||||||||| || ||||| || |||||||||||||| || |||||||| ||||| ||  | |  ||||||||  |||||||||  || |  ||      
T  12245928 ctcaacaaagcagcttgaacagctgccccataagcaacagcctcgtcagggttaatgctcttgcacaattccttcccgttgaaaaagtcctgtaatagct 12245829  T
Q  210 tctgcactttgggaatcctagaagagccaccaactagtacaacatcatccatactactgatgtccatct 278  Q
      || |||||||||||||||||||| |||||||| ||||||| |||||| ||| ||||  |||||||||    
T  12245828 gttggactttgggaatcctagaagatccaccaacaagtacaaaatcatctatagtactcttgtccatct 12245760  T

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Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 28 - 168
Target Start/End: Original strand, 15594598 - 15594738
Alignment:
Q  28 gatatctccactaactgaggtaccaagagacagaggtataacatctcgcagcaccaagttcggaacagtcttaatgcctccgctcaacaaagcagcctgg 127  Q
    |||||||||  ||| ||||  ||||||||||| ||||  ||||||| | | ||||||||| |||||| | ||||  ||| | ||||||||||||||||||    
T  15594598 gatatctcctttaagtgagacaccaagagacaaaggtgcaacatcttgtatcaccaagtttggaacatttttaaaaccttcactcaacaaagcagcctgg 15594697  T
Q  128 acagcagcaccataagcaacagcttcatcagggttgatgct 168  Q
    ||||| ||||||||||||||||| |||||||||||||||||    
T  15594698 acagctgcaccataagcaacagcctcatcagggttgatgct 15594738  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 66 - 267
Target Start/End: Complemental strand, 4679123 - 4678922
Alignment:
Q  66 taacatctcgcagcaccaagttcggaacagtcttaatgcctccgctcaacaaagcagcctggacagcagcaccataagcaacagcttcatcagggttgat 165  Q
    |||||||||||||||| || ||||| ||| ||||||  ||| ||||||| | |||||| |||| ||| ||||||||||||||||| ||||| ||||||||    
T  4679123 taacatctcgcagcacaaaattcgggacattcttaaaaccttcgctcaaaatagcagcttggatagctgcaccataagcaacagcctcatctgggttgat 4679024  T
Q  166 gcttttaaaaatatccttccccctgaaaaagttttgcagcagactctgcactttgggaatcctagaagagccaccaactagtacaacatcatccatacta 265  Q
     || ||  | | |||||||| | | ||||||| |||||  |||  |||||||||||||||||| || || ||||| || || ||||||||||| ||| ||    
T  4679023 actcttgcacaaatccttccgcttaaaaaagtcttgcaatagatcctgcactttgggaatcctcgatgaaccacccacaagaacaacatcatcaatatta 4678924  T
Q  266 ct 267  Q
    ||    
T  4678923 ct 4678922  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 66 - 278
Target Start/End: Complemental strand, 34467354 - 34467142
Alignment:
Q  66 taacatctcgcagcaccaagttcggaacagtcttaatgcctccgctcaacaaagcagcctggacagcagcaccataagcaacagcttcatcagggttgat 165  Q
    |||||||||||||||||||||| |||||| | |||| ||||   |||||||||||||| || ||||| ||  ||||||| ||||| ||||||||||||||    
T  34467354 taacatctcgcagcaccaagtttggaacattgttaaagcctttactcaacaaagcagcttgcacagctgcgacataagcgacagcctcatcagggttgat 34467255  T
Q  166 gcttttaaaaatatccttccccctgaaaaagttttgcagcagactctgcactttgggaatcctagaagagccaccaactagtacaacatcatccatacta 265  Q
    ||| ||  | | |||||| ||  |||||||||   |||  ||   ||||||||||||||||||||||||||| || || || ||| |||||| || ||||    
T  34467254 gctattgcatagatccttaccattgaaaaagtcccgcaatagctgctgcactttgggaatcctagaagagcccccgacaaggacagcatcatgcacacta 34467155  T
Q  266 ctgatgtccatct 278  Q
    ||  |||||||||    
T  34467154 ctcgtgtccatct 34467142  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 48 - 258
Target Start/End: Original strand, 35132040 - 35132250
Alignment:
Q  48 taccaagagacagaggtataacatctcgcagcaccaagttcggaacagtcttaatgcctccgctcaacaaagcagcctggacagcagcaccataagcaac 147  Q
    |||||||||||| |||| |||||||  | | |||||| || |||||| | || ||||||   ||||||||||||||||| || || || |||||||| ||    
T  35132040 taccaagagacaaaggtgtaacatcctgtaacaccaactttggaacattttttatgcctttactcaacaaagcagcctgaactgctgccccataagctac 35132139  T
Q  148 agcttcatcagggttgatgcttttaaaaatatccttccccctgaaaaagttttgcagcagactctgcactttgggaatcctagaagagccaccaactagt 247  Q
    ||| ||||| ||||| ||||| ||  | |  ||||||||  |||||||||||||||  ||   |||||||||||||||||||||||| || ||||| ||     
T  35132140 agcctcatcggggttaatgctcttgcacaactccttccctttgaaaaagttttgcaatagctgctgcactttgggaatcctagaagaccctccaacaaga 35132239  T
Q  248 acaacatcatc 258  Q
    |||||||||||    
T  35132240 acaacatcatc 35132250  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 68 - 267
Target Start/End: Original strand, 30774856 - 30775055
Alignment:
Q  68 acatctcgcagcaccaagttcggaacagtcttaatgcctccgctcaacaaagcagcctggacagcagcaccataagcaacagcttcatcagggttgatgc 167  Q
    ||||||||||||||||| || ||  || ||||||||||| | ||||| | ||||||||||||||| || || | |||||| || |||||||| |||||||    
T  30774856 acatctcgcagcaccaactttggggcattcttaatgccttcactcaatagagcagcctggacagctgccccgtgagcaactgcctcatcaggattgatgc 30774955  T
Q  168 ttttaaaaatatccttccccctgaaaaagttttgcagcagactctgcactttgggaatcctagaagagccaccaactagtacaacatcatccatactact 267  Q
    | ||  | | |||||||||  |||| || ||  |||  ||   |||||||||||||||||||||||| ||||| || || |||| |||||| | ||||||    
T  30774956 tcttgcacaaatccttcccattgaagaaattacgcaatagttcctgcactttgggaatcctagaagaaccaccgacaagaacaatatcatctacactact 30775055  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 165
Target Start/End: Complemental strand, 9336457 - 9336358
Alignment:
Q  66 taacatctcgcagcaccaagttcggaacagtcttaatgcctccgctcaacaaagcagcctggacagcagcaccataagcaacagcttcatcagggttgat 165  Q
    |||||||||| ||||||||||| ||  || |||||| |||| | ||||| | |||||| || ||||| ||||||||||||||||| ||||| ||||||||    
T  9336457 taacatctcgtagcaccaagttgggcgcattcttaaagccttcactcaaaatagcagcttgaacagctgcaccataagcaacagcctcatctgggttgat 9336358  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 186
Target Start/End: Complemental strand, 23597110 - 23597031
Alignment:
Q  107 ccgctcaacaaagcagcctggacagcagcaccataagcaacagcttcatcagggttgatgcttttaaaaatatccttccc 186  Q
    |||||||| | |||||| ||||| ||||| |||||||||||||| ||||||||||||||||| ||| |||  ||||||||    
T  23597110 ccgctcaaaatagcagcttggactgcagcgccataagcaacagcctcatcagggttgatgctcttacaaagttccttccc 23597031  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 162
Target Start/End: Original strand, 54396087 - 54396121
Alignment:
Q  128 acagcagcaccataagcaacagcttcatcagggtt 162  Q
    |||||||||||||||||||||||||||||||||||    
T  54396087 acagcagcaccataagcaacagcttcatcagggtt 54396121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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