View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7803_low_3 (Length: 537)
Name: NF7803_low_3
Description: NF7803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7803_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 49 - 460
Target Start/End: Original strand, 12320829 - 12321237
Alignment:
| Q |
49 |
ttgttaaacaggatttatcgagaatttaggtgcttaaaacggactgatttgatcaaagccatggccaattgtttgccaatggaaaccatacgcactggct |
148 |
Q |
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| T |
12320829 |
ttgttaaacaggatttataaagaatttaggtgcttaaaacgcactgatttgatcaaagccatggccaattgtttgccaatggaaactatacgtactggct |
12320928 |
T |
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| Q |
149 |
gtcaagtagtttccatagaattagatccaatcacacaatatcgacagcttgtgcttagtaatggaagtattcttcaagccaaggtatgtcttgtagaaaa |
248 |
Q |
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| T |
12320929 |
gtcaagtagtttccatagaattagatccaatcacacaatatcgacagcttgtgcttagtaatggaagtattcttcaagccaaggtatgtcttgtagaaaa |
12321028 |
T |
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| Q |
249 |
taagactgttacttttttcgcctttcaatcttctcgtatgctctgttcagattataaaatcctaaaaaatggagtgttatagaagtttttcttaagtgtt |
348 |
Q |
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| T |
12321029 |
taagactgttac-tttttcgcctttcaatcttctcgtatgctctattcagattataaaatccgaaaaaatggagtgttatagaagtttttctcaagtgtt |
12321127 |
T |
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| Q |
349 |
ttacgttttcagattatattaatccaaaatttgtagggcgtgcaagaaatcagtaggatgagaaaagaaatagtcaaaaaagaaagtagacctgtcaatt |
448 |
Q |
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| T |
12321128 |
ttacgtttttggattata-taattcaaaatttctagcgcgtgcaagaaatcagtagg-tgaaaaaagaaatagtcaaaaatgaaagtagacctgtcaatt |
12321225 |
T |
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| Q |
449 |
ttggtcggatcc |
460 |
Q |
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| T |
12321226 |
ttggtcggatcc |
12321237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 49 - 237
Target Start/End: Original strand, 12313352 - 12313540
Alignment:
| Q |
49 |
ttgttaaacaggatttatcgagaatttaggtgcttaaaacggactgatttgatcaaagccatggccaattgtttgccaatggaaaccatacgcactggct |
148 |
Q |
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| T |
12313352 |
ttgttaaacaggatttatcgagaatttaggtgcttaaaacgcactgatttgatcaaagccatggccaattgtttgccaatggaaactatacgtactggct |
12313451 |
T |
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| Q |
149 |
gtcaagtagtttccatagaattagatccaatcacacaatatcgacagcttgtgcttagtaatggaagtattcttcaagccaaggtatgt |
237 |
Q |
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| T |
12313452 |
gtcaagtagtttccatagaattagatccaatcacacaatattcacagcttgtgcttagtaatggaagtatccttcaagccaaggtatgt |
12313540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 12313303 - 12313336
Alignment:
| Q |
13 |
atggacatcatgttcgtaacatctcatagttaat |
46 |
Q |
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| T |
12313303 |
atggacatcatgtttgtaacatctcatagttaat |
12313336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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