View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7803_low_4 (Length: 448)

Name: NF7803_low_4
Description: NF7803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7803_low_4
NF7803_low_4
[»] chr7 (5 HSPs)
chr7 (11-435)||(45341146-45341568)
chr7 (94-234)||(4548267-4548409)
chr7 (79-263)||(6011403-6011586)
chr7 (92-155)||(11622442-11622506)
chr7 (147-235)||(19432388-19432474)
[»] chr3 (5 HSPs)
chr3 (89-299)||(19800545-19800754)
chr3 (306-434)||(14258889-14259023)
chr3 (333-429)||(16022869-16022971)
chr3 (148-299)||(16018989-16019136)
chr3 (151-210)||(25387029-25387088)
[»] chr8 (7 HSPs)
chr8 (78-299)||(24819942-24820160)
chr8 (147-301)||(15061971-15062124)
chr8 (310-434)||(15061753-15061884)
chr8 (82-234)||(15662802-15662954)
chr8 (155-297)||(16723492-16723632)
chr8 (128-245)||(15550776-15550892)
chr8 (76-197)||(22502004-22502125)
[»] chr4 (5 HSPs)
chr4 (133-299)||(16673431-16673597)
chr4 (301-436)||(16673668-16673810)
chr4 (306-391)||(41806043-41806127)
chr4 (81-261)||(18448904-18449084)
chr4 (185-234)||(13933031-13933079)
[»] scaffold0035 (1 HSPs)
scaffold0035 (83-301)||(71223-71437)
[»] scaffold0113 (1 HSPs)
scaffold0113 (90-296)||(24134-24339)
[»] scaffold0338 (2 HSPs)
scaffold0338 (148-301)||(18545-18696)
scaffold0338 (312-433)||(18789-18916)
[»] chr5 (2 HSPs)
chr5 (134-301)||(26058031-26058196)
chr5 (148-261)||(19079584-19079696)
[»] chr6 (6 HSPs)
chr6 (306-391)||(15483019-15483104)
chr6 (308-436)||(23846374-23846508)
chr6 (87-301)||(13123109-13123323)
chr6 (90-296)||(12331737-12331940)
chr6 (149-299)||(23846137-23846286)
chr6 (217-296)||(20891709-20891788)
[»] scaffold0100 (1 HSPs)
scaffold0100 (306-434)||(37884-38019)
[»] scaffold0001 (1 HSPs)
scaffold0001 (20-65)||(420420-420465)
[»] chr2 (3 HSPs)
chr2 (306-436)||(16592441-16592577)
chr2 (128-261)||(28579640-28579771)
chr2 (247-301)||(16592297-16592351)
[»] chr1 (1 HSPs)
chr1 (332-407)||(11843309-11843384)
[»] scaffold0086 (1 HSPs)
scaffold0086 (151-233)||(11300-11379)


Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 11 - 435
Target Start/End: Complemental strand, 45341568 - 45341146
Alignment:
11 atggacatcatgaatttaattgttggtgatgtgatgacctcttgatgttgaaatgaaaattgatgtgttatgattgattttaagataatattcacatgat 110  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
45341568 atggacaccatgaatttaattgttggtgatgtgatgacctcttgatgttgaaatgaaaattgatgtgttatgattgattttaagataatattcacatgat 45341469  T
111 gttagtattatgggataatgaacatgtgtatatgtgatacttgaaatccttgaatgctatttctttgattatattttattatgtgaaatactatttaacc 210  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
45341468 gttagtattatgggatgatgaacatgtgtatatgtgatacttgaaatccttgaatgctatttctttgattatattttattatgtgaaatactatttaacc 45341369  T
211 cctcaatggtcgtttggttgaccgtttcgccatttttataaatggtgtagatgacgtgcaggtttgagttcgtattgcttgtgagtgcttgggacttatg 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
45341368 cctcaatggtcgtttggttgaccgtttcgccatttttataaatggtgtagacgacgtgcaagtttgagttcgtattgcttgtgagtgcttgggacttatg 45341269  T
311 ctatgtatttatattattgccgagacttgttgtttatttatgtatgagatttgagatattgttcgtgatgtattatgagacatggtttttgatatttgtt 410  Q
    |||||||||||||||||||||  || ||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||    
45341268 ctatgtatttatattattgcc--gaattgttttttatttatgtatgagattttagatattgtccgtgatgtattatgagacatggtttttgatatttgtt 45341171  T
411 atatgttgcagagatatttatgatg 435  Q
    ||||||||| |||||||||||||||    
45341170 atatgttgctgagatatttatgatg 45341146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 94 - 234
Target Start/End: Complemental strand, 4548409 - 4548267
Alignment:
94 gataatattcacatgatgttagtattatgggataatgaacatgtgtat----atgtgatacttgaaatccttgaatgctatttctttgattatattttat 189  Q
    ||||||||||||||||||| |||||||| ||||| ||| ||||| |||    || ||||  |||||||||||||||||| |||||||||||||||| |||    
4548409 gataatattcacatgatgtcagtattataggatattgagcatgtatatctatatatgatgattgaaatccttgaatgct-tttctttgattatattgtat 4548311  T
190 tatgtgaaatactatttaacccctcaatggtcgtttggttgaccg 234  Q
    |||||| |||| ||| | |||||| ||| ||||||||||||||||    
4548310 tatgtggaatattatctcacccct-aatagtcgtttggttgaccg 4548267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 79 - 263
Target Start/End: Original strand, 6011403 - 6011586
Alignment:
79 tatgattgattttaagataatattcacatgatgttagtatt-atgggataatgaacatgtgtatatgtgatacttgaaatccttgaatgctatttctttg 177  Q
    ||||||||  || ||||| ||||||| | |||||||||||| | || || ||||| |||| | |||||||||  |||| || | ||||| ||| ||| ||    
6011403 tatgattggattgaagatgatattcataagatgttagtattcaaggaatgatgaatatgtatgtatgtgatatgtgaa-tcgtagaatgttatatctatg 6011501  T
178 attatattttattatgtgaaatactatttaacccctcaatggtcgtttggttgaccgtttcgccatttttataaatggtgtagatg 263  Q
     |||||| || ||||||||| || ||| |||||||||| | ||||||||||||||||  || |||||| || ||||||||||||||    
6011502 cttatatctttttatgtgaa-tattatctaacccctcagttgtcgtttggttgaccgcctcaccatttctaaaaatggtgtagatg 6011586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 92 - 155
Target Start/End: Original strand, 11622442 - 11622506
Alignment:
92 aagataatattcacatgatgttagtattatggga-taatgaacatgtgtatatgtgatacttgaa 155  Q
    ||||||||||| | |||||||||||||| | ||| | |||||||||| |||||||||||||||||    
11622442 aagataatatttatatgatgttagtattttaggaatgatgaacatgtatatatgtgatacttgaa 11622506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 235
Target Start/End: Original strand, 19432388 - 19432474
Alignment:
147 atacttgaaatccttgaatgctatttctttgattatattttattatgtgaaatactatttaacccctcaatggtcgtttggttgaccgt 235  Q
    |||||||||||| |||||||||||||  |||||||||||||||||| || |||| ||| |||| || |  | |||||||||||||||||    
19432388 atacttgaaatcattgaatgctattt-attgattatattttattatatggaatattatctaactccac-gtagtcgtttggttgaccgt 19432474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 3e-46; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 89 - 299
Target Start/End: Complemental strand, 19800754 - 19800545
Alignment:
89 tttaagataatattcacatgatgttagtattatgggataatgaacatgtgtatatgtgatacttgaaatccttgaatgctatttctttgattatatttta 188  Q
    |||| |||||||||| ||||||| ||||||| | |||| |||| ||||| |||||||| || ||||||||||||||||||||||||||||||| ||||||    
19800754 tttatgataatattcgcatgatgatagtattctaggatgatgagcatgtatatatgtggtatttgaaatccttgaatgctatttctttgattagatttta 19800655  T
189 ttatgtgaaatactatttaacccctcaatggtcgtttggttgaccgtttcgccatttttataaatggtgtagatgacgtgcaggtttgagttcgtattgc 288  Q
    ||||||| |||| ||| | ||||  || |||| ||||||||||| |  ||||||||||||| ||||||||| | |||||||||||||||||| | |||||    
19800654 ttatgtggaatattatctcacccaccagtggttgtttggttgactgcctcgccatttttat-aatggtgtacacgacgtgcaggtttgagtttgcattgc 19800556  T
289 ttgtgagtgct 299  Q
    |||| ||||||    
19800555 ttgtaagtgct 19800545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 306 - 434
Target Start/End: Complemental strand, 14259023 - 14258889
Alignment:
306 ttatgctatgtatttatattattgccgagacttgttgtttatttatgtatgagatttgagatattgttcgtgatgtattatg-------agacatggttt 398  Q
    ||||| ||||||||||||||||||  |||||||||||| |||| ||||||||||||||||||||| || |||||||||||||       ||||||||||     
14259023 ttatgttatgtatttatattattgatgagacttgttgtctatt-atgtatgagatttgagatatttttggtgatgtattatgagacctgagacatggttg 14258925  T
399 ttgatatttgttatatgttgcagagatatttatgat 434  Q
    |||| |||||||| |||||||||||||||| |||||    
14258924 ttgagatttgttacatgttgcagagatattcatgat 14258889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 333 - 429
Target Start/End: Original strand, 16022869 - 16022971
Alignment:
333 agacttgttgtttatttatgtatgagatttgagatattgttcgtgatgtattatg-------agacatggtttttgatatttgttatatgttgcagagat 425  Q
    ||||||||||| |||| |||| | ||||||||||||||||| ||| |||||||||       |||||||||| |||| |||||||||||||||| |||||    
16022869 agacttgttgtctatt-atgtttaagatttgagatattgttggtgttgtattatgagacctaagacatggttgttgagatttgttatatgttgctgagat 16022967  T
426 attt 429  Q
    ||||    
16022968 attt 16022971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 148 - 299
Target Start/End: Original strand, 16018989 - 16019136
Alignment:
148 tacttgaaatccttgaatgctatttctttgattatattttattatgtgaaatactatttaacccctcaatggtcgtttggttgaccgtttcgccattttt 247  Q
    ||||||||||||||||||||||||| | ||   || ||||||||| || |||| ||| ||| ||  |||||||| |||||||||||   |  |||||| |    
16018989 tacttgaaatccttgaatgctattt-tatgc--atgttttattatatggaatattatataaacca-caatggtcatttggttgaccacctacccatttgt 16019084  T
248 ataaatggtgtagatgacgtgcaggtttgagttcgtattgcttgtgagtgct 299  Q
    ||||||||||| || |||||||| |||||||||| | ||| |||||||||||    
16019085 ataaatggtgtggacgacgtgcatgtttgagttcttgttgtttgtgagtgct 16019136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 151 - 210
Target Start/End: Original strand, 25387029 - 25387088
Alignment:
151 ttgaaatccttgaatgctatttctttgattatattttattatgtgaaatactatttaacc 210  Q
    |||||||| ||||||| |||||| || ||||||||||||||||||||||  |||||||||    
25387029 ttgaaatctttgaatgttatttcctttattatattttattatgtgaaatgttatttaacc 25387088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 78 - 299
Target Start/End: Original strand, 24819942 - 24820160
Alignment:
78 ttatgattgattttaagataatattcacatgatgttagtattatgggataatgaacatgtgtatatgtgatacttgaaatccttgaatgctatttctttg 177  Q
    |||| |||||||||| || |||||||| | |||||||||||| | |||| |||| ||||| ||||||||||  ||||||||||||||| |||||| | ||    
24819942 ttatcattgattttatgacaatattcatacgatgttagtattctaggatgatgagcatgtatatatgtgatgtttgaaatccttgaattctattt-tgtg 24820040  T
178 attatattttattatgtgaaatactatttaacccctcaatggtcgtttggttgaccgtttcgccatttttataaatggtgtagatgacgtgcaggtttga 277  Q
     || ||||||| |||||| |||| ||| |||| ||| | | ||||||||||||||||  || |||||| |||||||||||||||||||||||||||||||    
24820041 cttttattttactatgtggaatattatctaactcct-agttgtcgtttggttgaccgcctcaccatttgtataaatggtgtagatgacgtgcaggtttga 24820139  T
278 gttcgtattgcttgtgagtgct 299  Q
    | ||||||||||||||||||||    
24820140 g-tcgtattgcttgtgagtgct 24820160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 147 - 301
Target Start/End: Complemental strand, 15062124 - 15061971
Alignment:
147 atacttgaaatccttgaatgctatttctttgattatattttattatgtgaaatactatttaacccctcaatggtcgtttggttgaccgtttcgccatttt 246  Q
    ||||||||||||||||| ||  ||||  ||||||||||||||||||||| |||| ||| |||||  ||| |||| |||||||||||||  |  ||||||     
15062124 atacttgaaatccttgactgtcatttacttgattatattttattatgtggaatattatctaacct-tcagtggttgtttggttgaccgcctacccatttg 15062026  T
247 tataaatggtgtagatgacgtgcaggtttgagttcgtattgcttgtgagtgcttg 301  Q
    ||| ||||||||||| |||||||| | |||||||| |||||||||||||||||||    
15062025 tatgaatggtgtagacgacgtgcatgattgagttcctattgcttgtgagtgcttg 15061971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 310 - 434
Target Start/End: Complemental strand, 15061884 - 15061753
Alignment:
310 gctatgtatttatattattgccgagacttgttgtttatttatgtatgagatttgagatattgttcgtgatgtattatgag-------acatggtttttga 402  Q
    ||||||||||||| ||||||  |||||||| ||| ||||||||| ||| |||||||||||||||  ||||||||||||||       |||||||| ||||    
15061884 gctatgtatttattttattgatgagacttgctgtctatttatgtctgaaatttgagatattgttaatgatgtattatgagacctgatacatggttgttga 15061785  T
403 tatttgttatatgttgcagagatatttatgat 434  Q
     |||||||||||||||| ||||||||| ||||    
15061784 gatttgttatatgttgctgagatatttttgat 15061753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 82 - 234
Target Start/End: Original strand, 15662802 - 15662954
Alignment:
82 gattgattttaagataatattcacatgatgttagtattatggga-taatgaacatgtgtatatgtgatacttgaaatccttgaatgctatttctttgatt 180  Q
    |||||| || ||||||||||||| | |||||||||||| | ||| || ||| ||||| ||||||||||||||||||  || ||||||||||| | || ||    
15662802 gattgaattgaagataatattcatacgatgttagtattctaggaatattgagcatgtatatatgtgatacttgaaaatctagaatgctatttttgtgctt 15662901  T
181 atattttattatgtgaaatactatttaacccctcaatggtcgtttggttgaccg 234  Q
     ||| || ||||||| |||| ||| |||||||  | ||||||||||||||||||    
15662902 gtatctttttatgtg-aatattatctaaccccctagtggtcgtttggttgaccg 15662954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 155 - 297
Target Start/End: Complemental strand, 16723632 - 16723492
Alignment:
155 aatccttgaatgctatttctttgattatattttattatgtgaaatactatttaacccctcaatggtcgtttggttgaccgtttcgccatttttataaatg 254  Q
    |||| |||||| ||||| |||||||| |||||||| || ||||||| ||| |||||  ||| |||||||||| || ||||  |  |||||| ||| ||||    
16723632 aatcattgaattctattactttgattttattttatcatatgaaatattatctaacc--tcattggtcgtttgatttaccgcctacccatttgtatgaatg 16723535  T
255 gtgtagatgacgtgcaggtttgagttcgtattgcttgtgagtg 297  Q
    |||||||  ||||||||  |||||| |||||||||||||||||    
16723534 gtgtagacaacgtgcagacttgagtccgtattgcttgtgagtg 16723492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 128 - 245
Target Start/End: Original strand, 15550776 - 15550892
Alignment:
128 atgaacatgtgtatatgtgatacttgaaatccttgaatgctatttctttgattatattttattatgtgaaatactatttaacccctcaatggtcgtttgg 227  Q
    |||| ||||| |||||||||| ||||||||  | ||||||||||| | ||||||||| || ||||||| |||| ||| ||||| || | |||||||||||    
15550776 atgagcatgtatatatgtgattcttgaaattatagaatgctatttttgtgattatatatttttatgtg-aatattatataacctcttagtggtcgtttgg 15550874  T
228 ttgaccgtttcgccattt 245  Q
    ||||| || || ||||||    
15550875 ttgactgtctcaccattt 15550892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 197
Target Start/End: Original strand, 22502004 - 22502125
Alignment:
76 tgttatgattgattttaagataatattcacatgatgttagtattat-gggataatgaacatgtgtatatgtgatacttgaaatccttgaatgctatttct 174  Q
    |||||||||||| || |||||||||||||  ||||| ||||||| | || || |||| ||||| ||||||||||| ||| |||||| ||||| ||| | |    
22502004 tgttatgattgaattaaagataatattcatgtgatggtagtattctaggaatgatgagcatgtatatatgtgatatttg-aatcctagaatgttatattt 22502102  T
175 ttgattatattttattatgtgaa 197  Q
     || |||||| || |||||||||    
22502103 gtgcttatatatttttatgtgaa 22502125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 9e-37; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 133 - 299
Target Start/End: Original strand, 16673431 - 16673597
Alignment:
133 catgtgtatatgtgatacttgaaatccttgaatgctatttctttgattatattttattatgtgaaatactatttaacccctcaatggtcgtttggttgac 232  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||| ||||  | || |||||||||||||||     
16673431 catgtatatatttgatacttgaaatccttgaatgctatttctttgattaaattttattatgtggaatattatctaacatcccagtggtcgtttggttgag 16673530  T
233 cgtttcgccatttttataaatggtgtagatgacgtgcaggtttgagttcgtattgcttgtgagtgct 299  Q
    |   || | |||| || ||||||||||||  || |||||||||||||||||||| ||||||||||||    
16673531 cacctcactatttctaaaaatggtgtagacaacatgcaggtttgagttcgtattacttgtgagtgct 16673597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 301 - 436
Target Start/End: Original strand, 16673668 - 16673810
Alignment:
301 gggacttatgctatgtatttatattattgccgagacttgttgtttatttatgtatgagatttgagatattgttcgtgatgtatta-------tgagacat 393  Q
    |||||||||| | ||||||||| |||||||  | ||||||||||||||||||| | ||||||||||||||||| |||||||||||       ||||||||    
16673668 gggacttatgttgtgtatttatgttattgctaaaacttgttgtttatttatgtctaagatttgagatattgttggtgatgtattatgagacctgagacat 16673767  T
394 ggtttttgatatttgttatatgttgcagagatatttatgatgt 436  Q
    ||||||||| ||| ||||||||  |  ||||||||||||||||    
16673768 ggtttttgagattcgttatatgcggttgagatatttatgatgt 16673810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 306 - 391
Target Start/End: Complemental strand, 41806127 - 41806043
Alignment:
306 ttatgctatgtatttatattattgccgagacttgttgtttatttatgtatgagatttgagatattgttcgtgatgtattatgagac 391  Q
    |||||||||| |||||||||| |||||||||||||| | |||| |||| |||||||||||||||| || ||| |||||||||||||    
41806127 ttatgctatgcatttatattactgccgagacttgttatctatt-atgtctgagatttgagatattattggtgttgtattatgagac 41806043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 81 - 261
Target Start/End: Complemental strand, 18449084 - 18448904
Alignment:
81 tgattgattttaagataatattcacatgatgttagtattat-gggataatgaacatgtgtatatgtgatacttgaaatccttgaatgctatttctttgat 179  Q
    ||||||| || |||||||||||||||||||||||||||| |  | ||| ||  |||||  |||||||||||||||||| ||  ||||||| || | || |    
18449084 tgattgagttgaagataatattcacatgatgttagtattgtaagaatattgtgcatgtaaatatgtgatacttgaaattctataatgctacttttgtgct 18448985  T
180 tatattttattatgtgaaatactatttaacccctcaatggtcgtttggttgaccgtttcgccatttttataaatggtgtaga 261  Q
    ||||  || ||||||| |||| ||| |||||||  | ||||||||| ||||||||  || |||||| || ||||||||||||    
18448984 tatacgtttttatgtg-aatattatctaaccccctagtggtcgtttagttgaccgcctcaccatttataaaaatggtgtaga 18448904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 234
Target Start/End: Complemental strand, 13933079 - 13933031
Alignment:
185 tttattatgtgaaatactatttaacccctcaatggtcgtttggttgaccg 234  Q
    |||||||||||||||| ||| ||||||| || ||||||||||||||||||    
13933079 tttattatgtgaaatattatctaacccc-cagtggtcgtttggttgaccg 13933031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 83 - 301
Target Start/End: Original strand, 71223 - 71437
Alignment:
83 attgattttaagataatattcacatgatgttagtattatgggataatgaacatgtgtatatgtgatacttgaaatccttgaatgctatttctttgattat 182  Q
    ||||| |||| |||||||||| ||||||||||||||| | |||| ||||| |||| | ||||| ||||||||||| |||||||||   ||||||||||||    
71223 attgagtttaggataatattcgcatgatgttagtattctaggatgatgaatatgtatgtatgtaatacttgaaattcttgaatgc---ttctttgattat 71319  T
183 attttattatgtgaaatactatttaacccctcaatggtcgtttggttgaccgtttcgccatttttataaatggtgtagatgacgtgcaggtttgagttcg 282  Q
    || |||||||||| |||| ||| ||| |||||| ||||||||||||||||||  |  |||||| |||||||| |||||| |  ||||| | |  |||||     
71320 atcttattatgtggaatattatctaa-ccctcactggtcgtttggttgaccgcctacccatttgtataaatgttgtagacggtgtgcatgatcaagttct 71418  T
283 tattgcttgtgagtgcttg 301  Q
    |||||||||||||||||||    
71419 tattgcttgtgagtgcttg 71437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 90 - 296
Target Start/End: Original strand, 24134 - 24339
Alignment:
90 ttaagataatattcacatgatgttagtattatggga-taatgaacatgtgtatatgtgatacttgaaatccttgaatgctatttctttgattatatttta 188  Q
    |||||||||||||||||||||||||||||| | ||| | ||||| |||| ||| ||  |||||||||||||||||||| ||||| | |||||||||||||    
24134 ttaagataatattcacatgatgttagtattctaggagtgatgaatatgtatatgtgctatacttgaaatccttgaatgttattt-tatgattatatttta 24232  T
189 ttatgtgaaatactatttaacccctcaatggtcgtttggttgaccgtttcgccatttttataaatggtgtagatgacgtgcaggtttgagttcgtattgc 288  Q
    |||||||||||  ||| ||| |||||| |||| |||||||||||||  |  |||||| ||| ||||||||||| |||||||| | |||||  | |||||     
24233 ttatgtgaaatgttatctaa-ccctcagtggttgtttggttgaccgcctacccatttgtatgaatggtgtagacgacgtgcatgattgagaacttattgt 24331  T
289 ttgtgagt 296  Q
    ||||||||    
24332 ttgtgagt 24339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0338 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: scaffold0338
Description:

Target: scaffold0338; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 148 - 301
Target Start/End: Original strand, 18545 - 18696
Alignment:
148 tacttgaaatccttgaatgctatttctttgattatattttattatgtgaaatactatttaacccctcaatggtcgtttggttgaccgtttcgccattttt 247  Q
    ||||||||||||||||||||| ||| | |||||||||||||||||||| |||| ||| |||||| ||| ||||||||||||||||||| |  |||||| |    
18545 tacttgaaatccttgaatgctgttt-tatgattatattttattatgtggaatattatctaaccc-tcagtggtcgtttggttgaccgtctacccatttgt 18642  T
248 ataaatggtgtagatgacgtgcaggtttgagttcgtattgcttgtgagtgcttg 301  Q
    || ||||||||| | | |||||| | |||||||| |||| ||||||||||||||    
18643 atgaatggtgtaaacggcgtgcatgattgagttcttatttcttgtgagtgcttg 18696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0338; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 433
Target Start/End: Original strand, 18789 - 18916
Alignment:
312 tatgtatttatattattgccgagacttgttgtttatttatgtatgagatttgagatattgttcgtgatgtattatgagac-------atggtttttgata 404  Q
    |||||||| | ||||||||||||||||||||| ||||  ||| | | |||| ||| ||| || |||||||||||||||||       |||||| |||| |    
18789 tatgtattgacattattgccgagacttgttgtctattg-tgtctcatatttaagacatttttggtgatgtattatgagaccttagacatggttgttgaga 18887  T
405 tttgttatatgttgcagagatatttatga 433  Q
    |||||| |||||||| |||||||||||||    
18888 tttgttttatgttgctgagatatttatga 18916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 134 - 301
Target Start/End: Complemental strand, 26058196 - 26058031
Alignment:
134 atgtgtatatgtgatacttgaaatccttgaatgctatttctttgattatattttattatgtgaaatactatttaacccctcaatggtcgtttggttgacc 233  Q
    |||||||| | | |||||||||||||||||||| ||||| | |||||||||||||||||||| |||| ||| |||||||| | ||||| ||||||||| |    
26058196 atgtgtatgtataatacttgaaatccttgaatgatattt-tatgattatattttattatgtggaatattatctaacccct-agtggtcatttggttgatc 26058099  T
234 gtttcgccatttttataaatggtgtagatgacgtgcaggtttgagttcgtattgcttgtgagtgcttg 301  Q
    |  |  |||||| ||||||||||||||| |  ||||| | |||||||| |||||||| | ||||||||    
26058098 gcctacccatttgtataaatggtgtagacggagtgcatgattgagttcttattgcttataagtgcttg 26058031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 148 - 261
Target Start/End: Original strand, 19079584 - 19079696
Alignment:
148 tacttgaaatccttgaatgctatttctttgattatattttattatgtgaaatactatttaacccctcaatggtcgtttggttgaccgtttcgccattttt 247  Q
    ||||| |||||||  |||||||||||| || |||||| || ||||||||| |  ||| ||||| | || |||| |||||||||||||  || ||||||||    
19079584 tactttaaatcctataatgctatttctgtgcttatatctttttatgtgaa-tgttatctaacctcccagtggttgtttggttgaccggctcaccattttt 19079682  T
248 ataaatggtgtaga 261  Q
    | ||||||||||||    
19079683 aaaaatggtgtaga 19079696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 306 - 391
Target Start/End: Original strand, 15483019 - 15483104
Alignment:
306 ttatgctatgtatttatattattgccgagacttgttgtttatttatgtatgagatttgagatattgttcgtgatgtattatgagac 391  Q
    ||||| ||||||||||| ||  ||| ||||||| |||| || |||||| ||||||||||||||||||| |||||||||||||||||    
15483019 ttatgttatgtatttatgttgctgctgagacttattgtctagttatgtttgagatttgagatattgttggtgatgtattatgagac 15483104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 308 - 436
Target Start/End: Original strand, 23846374 - 23846508
Alignment:
308 atgctatgtatttatattattgccgagacttgttgtttatttatgtatgagatttgagatattgttcgtgatgtattatgagac-------atggttttt 400  Q
    |||||||| |||||||||||||  ||||||||| ||||| |||||| |||| || ||||||||||| ||||| |||||||||||       |||||| ||    
23846374 atgctatgcatttatattattgttgagacttgt-gtttaattatgtctgaggttggagatattgttggtgatatattatgagacctaagatatggttgtt 23846472  T
401 gatatttgttatatgttgcagagatatttatgatgt 436  Q
    || |||||||||||||||  || |||||||||||||    
23846473 gagatttgttatatgttgttgaaatatttatgatgt 23846508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 87 - 301
Target Start/End: Original strand, 13123109 - 13123323
Alignment:
87 attttaagataatattcacatgatgttagtattatggga-taatgaacatgtgtatatgtgatacttgaaatccttgaatgctatttcttt-gattatat 184  Q
    |||| |||||||||||||||| ||||||||||| |  || | |||| |||||  || |||  || |||||||| ||||||||||||| ||| ||||||||    
13123109 atttgaagataatattcacattatgttagtattttacgaatgatgagcatgtacatgtgtattaattgaaatcattgaatgctatttattttgattatat 13123208  T
185 tttattatgtgaaatactatttaacccctcaatggtcgtttggttgaccgtttcgccatttttataaatggtgtagatgacgtgcaggtttgagttcgta 284  Q
    ||||||| ||||| ||  || |||||| ||| || ||||||| ||| ||| ||  |||||| ||| ||||||||||| | ||||||   |||| ||| ||    
13123209 tttattacgtgaa-tataatctaaccc-tcagtgatcgtttgattggccgcttacccatttgtatgaatggtgtagacggcgtgcaaaattgatttctta 13123306  T
285 ttgcttgtgagtgcttg 301  Q
    |||||||||||||||||    
13123307 ttgcttgtgagtgcttg 13123323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 90 - 296
Target Start/End: Original strand, 12331737 - 12331940
Alignment:
90 ttaagataatattcacatgatgttagtattatggga-taatgaacatgtgtatatgtgatacttgaaatccttgaatgctatttctttgattatatttta 188  Q
    ||||||||||||||| |||||||||||||| | ||| | ||||| |||| ||| ||  |||||  ||||||| |||| |||||| | || ||||||||||    
12331737 ttaagataatattcatatgatgttagtattctaggagtgatgaatatgtatatgtgctatacta-aaatcctagaattctattt-tatgtttatatttta 12331834  T
189 ttatgtgaaatactatttaacccctcaatggtcgtttggttgaccgtttcgccatttttataaatggtgtagatgacgtgcaggtttgagttcgtattgc 288  Q
    ||||||| ||||  || |||||||  | ||||||||| ||||||||  |  |||||| ||| ||||||||||| ||| || | | || ||||| ||||||    
12331835 ttatgtggaatataatctaacccc--agtggtcgtttagttgaccgcctacccatttgtatgaatggtgtagacgacatgtatgattaagttcttattgc 12331932  T
289 ttgtgagt 296  Q
    ||||||||    
12331933 ttgtgagt 12331940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 149 - 299
Target Start/End: Original strand, 23846137 - 23846286
Alignment:
149 acttgaaatccttgaatgctatttctttgattatattttattatgtgaaatactatttaacccctcaatggtcgtttggttgaccgtttcgccattttta 248  Q
    ||||||||||| |||||| ||||| | || ||||||||||| |||||||||| ||| | ||||  || ||||||||||||| ||||  |  | ||||| |    
23846137 acttgaaatccatgaatgttattt-tatgtttatattttatcatgtgaaatattatctcaccctccagtggtcgtttggttaaccgcattactattttaa 23846235  T
249 taaatggtgtagatgacgtgcaggtttgagttcgtattgcttgtgagtgct 299  Q
     |||||||||||||  | |||| |||||| ||| ||||| |||||||||||    
23846236 aaaatggtgtagatagcatgcatgtttgatttcttattgattgtgagtgct 23846286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 296
Target Start/End: Complemental strand, 20891788 - 20891709
Alignment:
217 tggtcgtttggttgaccgtttcgccatttttataaatggtgtagatgacgtgcaggtttgagttcgtattgcttgtgagt 296  Q
    ||||||||||||||||||  |  |||||| ||| ||||||||||| | |||||| | |||| ||| ||||||||||||||    
20891788 tggtcgtttggttgaccgcctacccatttgtatgaatggtgtagacggcgtgcatgattgatttcttattgcttgtgagt 20891709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 306 - 434
Target Start/End: Complemental strand, 38019 - 37884
Alignment:
306 ttatgctatgtatttatattattgccgagacttgttgtttatttatgtatgagatttgagatattgttcgtgatgtatt-------atgagacatggttt 398  Q
    ||||| |||||||||   ||||||  ||||||||| || || |||||| ||||||||||||||||||| ||||||||||       |||||||||||||     
38019 ttatgttatgtatttgctttattgatgagacttgtcgtctacttatgtttgagatttgagatattgttggtgatgtattatgaaacatgagacatggttg 37920  T
399 ttgatatttgttatatgttgcagagatatttatgat 434  Q
    |||| |||| ||||| ||||| ||||||||| ||||    
37919 ttgagatttattataggttgctgagatatttttgat 37884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 420465 - 420420
Alignment:
20 atgaatttaattgttggtgatgtgatgacctcttgatgttgaaatg 65  Q
    |||||||||||| |||||||||||||||||||||||||||||||||    
420465 atgaatttaattattggtgatgtgatgacctcttgatgttgaaatg 420420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 306 - 436
Target Start/End: Original strand, 16592441 - 16592577
Alignment:
306 ttatgctatgtatttatattattgccgagacttgttgtttatttatgtatgagattt-gagatattgttcgtgatgtattat-------gagacatggtt 397  Q
    ||||| |||||||||| |||||||| ||||||||||| |   |||||| |||||||| ||||| | ||| ||||||||||||       |||||||||||    
16592441 ttatgttatgtatttacattattgctgagacttgttgcta--ttatgtctgagattttgagatgtcgttggtgatgtattataagatctgagacatggtt 16592538  T
398 tttgatatttgttatatgttgcagagatatttatgatgt 436  Q
     |||| |||||| ||||||||| ||||||||||||||||    
16592539 gttgagatttgtcatatgttgctgagatatttatgatgt 16592577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 128 - 261
Target Start/End: Original strand, 28579640 - 28579771
Alignment:
128 atgaacatgtgtatatgtgatacttgaaatccttgaatgctatttctttgattatattttattatgtgaaatactatttaacccctcaatggtcgtttgg 227  Q
    |||| ||||| ||||||||||| ||||| ||||  |||||||| | | || |||||| || || |||||| || ||| ||||||| ||||||||||||||    
28579640 atgagcatgtatatatgtgatatttgaa-tcctaaaatgctatatttgtgcttatatctttttgtgtgaa-tattatctaaccccacaatggtcgtttgg 28579737  T
228 ttgaccgtttcgccatttttataaatggtgtaga 261  Q
    |||||| | || |||||| || |||| |||||||    
28579738 ttgaccatctctccatttgtaaaaatagtgtaga 28579771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 301
Target Start/End: Original strand, 16592297 - 16592351
Alignment:
247 tataaatggtgtagatgacgtgcaggtttgagttcgtattgcttgtgagtgcttg 301  Q
    ||||||||||| ||| | |||||||| |||||||| ||||||| |||||||||||    
16592297 tataaatggtggagacggcgtgcaggattgagttcttattgctagtgagtgcttg 16592351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 407
Target Start/End: Complemental strand, 11843384 - 11843309
Alignment:
332 gagacttgttgtttatttatgtatgagatttgagatattgttcgtgatgtattatgagacatggtttttgatattt 407  Q
    ||||||||||| | | ||||| |||||||||||||| |  || |||||||||||||| |||||||| |||| ||||    
11843384 gagacttgttgctcacttatgcatgagatttgagatttatttagtgatgtattatgacacatggttgttgagattt 11843309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 233
Target Start/End: Original strand, 11300 - 11379
Alignment:
151 ttgaaatccttgaatgctatttctttgattatattttattatgtgaaatactatttaacccctcaatggtcgtttggttgacc 233  Q
    ||||||||||||||| || ||| ||||||||| ||| ||| |||| |||||||||||||||| || || ||||||||||||||    
11300 ttgaaatccttgaatact-tttatttgattatgttt-attgtgtggaatactatttaacccc-cagtgatcgtttggttgacc 11379  T

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