View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7803_low_8 (Length: 369)
Name: NF7803_low_8
Description: NF7803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7803_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 5 - 360
Target Start/End: Original strand, 16160658 - 16161008
Alignment:
| Q |
5 |
ctttggtgttgccggttctgttgagagtacttccttggcctttggtgctgaacatgaatctgctttcaaggctaatggatctggtgtcaaaagaaatctt |
104 |
Q |
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| T |
16160658 |
ctttggtgttgccggttctgctgagagtacttccttggccgttggtgctgaacatgaatctgctttcaa-----atggatctggtgccaaaagaaatctt |
16160752 |
T |
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| Q |
105 |
tcttctgcctttgttgaagttgactctgatgatgagactcttgcctagaaatatggaaggattagaaagggttgaacgtagtggttggttgtcgaactgt |
204 |
Q |
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| T |
16160753 |
tcttctgcctttgttgaagttgactctgatgatgagactcttgcccagaaatatggaaggattagaaagggttgaacgcagtggttggttgtcgaactgt |
16160852 |
T |
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| Q |
205 |
ctgagttatcgtttgtaataatggctgcattagtgcatcaattgaaccattgtgtctatgtttgttgttgtttgcttcattttgtttggagatatggact |
304 |
Q |
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| T |
16160853 |
ctgagttatcgtttgtagtaatggctgcattagtgcatcaattgaaccattgtgtctatgtttgttgttgtttgcttcattttgtttggagatgtggact |
16160952 |
T |
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| Q |
305 |
ccctcttatgttgttccttttgaatttttatgttgtgtgtctcttttatgtgatgt |
360 |
Q |
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| T |
16160953 |
ccctcttatgttgttccttttgaatttttatgttgtgtgtctcttttatgtgatgt |
16161008 |
T |
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