View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7804_high_1 (Length: 700)
Name: NF7804_high_1
Description: NF7804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7804_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 264 - 498
Target Start/End: Original strand, 17283537 - 17283771
Alignment:
| Q |
264 |
gtgtataagtgttggtactcttagatgatctatatactttagattagcactaggttgttagagttcagttacttgagttagtagttagttggataagatt |
363 |
Q |
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| T |
17283537 |
gtgtataagtgttggtactcttagatgatctatatactttagattagcactaggttgttagagttcagttacttgagttagtagttagttggataagatt |
17283636 |
T |
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| Q |
364 |
gagttagtcagtcagagattaacctagttacatagtttatttgaaagtaaagtaatcatagttagttaacataacctacttcatataaaggattattaga |
463 |
Q |
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| T |
17283637 |
gagttagtcagtcagagattaacatagttacatagtttacttgaaagtcaagtaatcataggtagttaacataacctacttcatataaaggattattaga |
17283736 |
T |
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| Q |
464 |
gtgtgtatttgatcatgaattttacaatttctcca |
498 |
Q |
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| T |
17283737 |
gtgtgtatttgatcataaattttacaatttttcca |
17283771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 11 - 253
Target Start/End: Original strand, 17283203 - 17283449
Alignment:
| Q |
11 |
gaatatatgcaacactgcacctctgaaaaggaggattgcagtaacgacatcaattattataaaataaacttgacagaatatctcaattctcaattcccat |
110 |
Q |
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| T |
17283203 |
gaatatatgcaacactgcacctctgaaaaggaggattgcagtaacgacatcaattattataaaataaacttgacagaatatctcaattctcaattcccat |
17283302 |
T |
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| Q |
111 |
gtagatcattttaccatatgcaa-nnnnnnnccactacttatgtttctcgtgtt-agggtataactttaccttc--gagattgagaagagtacttgttaa |
206 |
Q |
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| T |
17283303 |
gtagatcattttaccatatgcaattttttttctactacttatgtttctcgtgttgggggtataactttaccttcatgagattgagaagagtacttgttaa |
17283402 |
T |
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| Q |
207 |
tttgtagtagcagcatgtataattcaaattataggtctagaagatta |
253 |
Q |
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| T |
17283403 |
tttgtagtagcagcatgtataattcaaattataggtctagaagatta |
17283449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 307 - 371
Target Start/End: Original strand, 34015838 - 34015902
Alignment:
| Q |
307 |
ttagcactaggttgttagagttcagttacttgagttagtagttagttggataagattgagttagt |
371 |
Q |
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| T |
34015838 |
ttagcacaagtttgctagagattagttacttgagctagaagttagttgaataagattgagttagt |
34015902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 303 - 371
Target Start/End: Complemental strand, 35987858 - 35987790
Alignment:
| Q |
303 |
tagattagcactaggttgttagagttcagttacttgagttagtagttagttggataagattgagttagt |
371 |
Q |
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| T |
35987858 |
tagatcagcacaagtttgttagaggttagttatttgagctagaagttaattgaataagattgagttagt |
35987790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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