View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7804_high_13 (Length: 263)
Name: NF7804_high_13
Description: NF7804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7804_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 27489276 - 27489038
Alignment:
| Q |
1 |
tctccgcaattgtttgatattgctaaattctttgagatnnnnnnnctgaacttattacttttcattatggttaattgatgatcaaaatttacaacaattt |
100 |
Q |
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| T |
27489276 |
tctccgcaattgtttgatattgctaagttctttgagataaaaaaactgaactta---ctttttattatggttaattgatgatcaaaatttacaacaattt |
27489180 |
T |
|
| Q |
101 |
taaagatttaatcatatataagaatttcatcttgatccattaagcgaaatattcatttcttgacgtttgatgcaatttatttggtatagattctcacatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27489179 |
taaagatttaatcatatataagaatttcatcttgatccattaagcgaaatattcatttcttgacgtttgatgcaatttatttggtatagattctcacatt |
27489080 |
T |
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| Q |
201 |
caaaatatccctcttaactaattttcttacttttcaccattttcc |
245 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||| |
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| T |
27489079 |
caaaatatccctcttaac---ttttcttacttttcaccattttcc |
27489038 |
T |
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