View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7804_high_14 (Length: 253)
Name: NF7804_high_14
Description: NF7804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7804_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 25584833 - 25585080
Alignment:
| Q |
1 |
attgagtgctatccaggaactagaattggaaggnnnnnnngcagcagcagttttcatcacttcacctacttatcatggtatttgcagtaacttgagtgac |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25584833 |
attgagtgctatccaggaactagaattggaaggaaaaaaagcagcagcagttttcatcacttcacctacttatcatggtatttgcagtaacttgagtgac |
25584932 |
T |
|
| Q |
101 |
atttctgagttgtgtcattcccgtaaaattcctctgattgttgatgaagctcacggtgcacatctaggatttcattctgaactgcctagctcagccctcc |
200 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25584933 |
atttccgagttgtgtcattcccgtaaaattcctctgattgttgatgaagctcacggtgcacatctaggatttcattctgaactgcctagctcagccctcc |
25585032 |
T |
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| Q |
201 |
agcaaggggctgatctaactgtacagtctactcacaaggttctctgct |
248 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
25585033 |
agcaaggggctgatctaactgtacagtctactcacaaggttctttgct |
25585080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 25589716 - 25589958
Alignment:
| Q |
1 |
attgagtgctatccaggaactagaattggaaggnnnnnnngcagcagcagttttcatcacttcacctacttatcatggtatttgcagtaacttgagtgac |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
25589716 |
attgaatgctatccaggaactagaattggaaggaaagaaagcagcagcagttttcatcacttcacctacttaccatggtgtttgcagtaacttgagtgat |
25589815 |
T |
|
| Q |
101 |
atttctgagttgtgtcattcccgtaaaattcctctgattgttgatgaagctcacggtgcacatctaggatttcattctgaactgcctagctcagccctcc |
200 |
Q |
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||||||| ||||||||||| |||||||||||| ||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25589816 |
atttctgctttgtgtcattctcgtaaaattcctttgattgttgatgaagctcatggagcacatctaggattacattctgaactgcctagctcagccctcc |
25589915 |
T |
|
| Q |
201 |
agcaaggggctgatctaactgtacagtctactcacaaggttct |
243 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
25589916 |
agcaaggggctgatctaactgtacaatctactcacaaggttct |
25589958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 25599368 - 25599610
Alignment:
| Q |
1 |
attgagtgctatccaggaactagaattggaaggnnnnnnngcagcagcagttttcatcacttcacctacttatcatggtatttgcagtaacttgagtgac |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
25599368 |
attgaatgctatccaggaactagaattggaaggaaagaaagcagcagcagttttcatcacttcacctacttaccatggtgtttgcagtaacttgagtgat |
25599467 |
T |
|
| Q |
101 |
atttctgagttgtgtcattcccgtaaaattcctctgattgttgatgaagctcacggtgcacatctaggatttcattctgaactgcctagctcagccctcc |
200 |
Q |
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||||||| ||||||||||| |||||||||||| ||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25599468 |
atttctgctttgtgtcattctcgtaaaattcctttgattgttgatgaagctcatggagcacatctaggattacattctgaactgcctagctcagccctcc |
25599567 |
T |
|
| Q |
201 |
agcaaggggctgatctaactgtacagtctactcacaaggttct |
243 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
25599568 |
agcaaggggctgatctaactgtacaatctactcacaaggttct |
25599610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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