View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7804_high_18 (Length: 224)
Name: NF7804_high_18
Description: NF7804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7804_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 69 - 171
Target Start/End: Original strand, 31725696 - 31725800
Alignment:
| Q |
69 |
ataagtgagtgtatttggagaagacaaaaacaga--atatataattactgcattaatggtgatgaatatgtccatctattcaaatgcattaaaatgctct |
166 |
Q |
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| T |
31725696 |
ataagtgagtgtatttggagaagacaaaaacagagaatatataattacttcattaatggtgatgaatatgtccatctattcaaatgcattaaaatgcttt |
31725795 |
T |
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| Q |
167 |
ccaaa |
171 |
Q |
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||||| |
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| T |
31725796 |
ccaaa |
31725800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 31725643 - 31725686
Alignment:
| Q |
1 |
aaaatatgttcaagaatatataagtggtgttcaaaaatatattt |
44 |
Q |
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| T |
31725643 |
aaaatatgttcaaaaatatataagtggtgttcaaaaatatattt |
31725686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 112
Target Start/End: Complemental strand, 31725844 - 31725800
Alignment:
| Q |
70 |
taagtgagtgtatttggagaagacaaaaac--agaatatataatt |
112 |
Q |
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| T |
31725844 |
taagtgagtgtatttggagaagacaaaaacagagaatatataatt |
31725800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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