View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7804_high_2 (Length: 608)

Name: NF7804_high_2
Description: NF7804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7804_high_2
NF7804_high_2
[»] chr1 (40 HSPs)
chr1 (18-582)||(35248093-35248657)
chr1 (230-570)||(35262845-35263186)
chr1 (376-498)||(35476209-35476331)
chr1 (224-470)||(35270368-35270617)
chr1 (230-326)||(35190442-35190538)
chr1 (376-491)||(45531481-45531597)
chr1 (230-302)||(35276637-35276709)
chr1 (232-315)||(35225003-35225086)
chr1 (20-130)||(35252345-35252455)
chr1 (177-308)||(35147455-35147583)
chr1 (20-73)||(35476652-35476705)
chr1 (36-98)||(35200221-35200283)
chr1 (249-326)||(35208211-35208289)
chr1 (376-444)||(35147324-35147393)
chr1 (230-315)||(35200022-35200107)
chr1 (20-73)||(35295663-35295716)
chr1 (270-315)||(45531655-45531700)
chr1 (376-447)||(35190329-35190401)
chr1 (20-87)||(35190663-35190730)
chr1 (478-525)||(35251983-35252030)
chr1 (264-315)||(35252166-35252217)
chr1 (244-315)||(35295863-35295934)
chr1 (230-304)||(35189412-35189486)
chr1 (270-316)||(35281402-35281448)
chr1 (35-73)||(45531912-45531950)
chr1 (230-315)||(34309439-34309524)
chr1 (20-73)||(35147663-35147716)
chr1 (20-73)||(35270750-35270803)
chr1 (35-87)||(35216251-35216303)
chr1 (264-315)||(8638991-8639042)
chr1 (248-315)||(35194583-35194650)
chr1 (36-87)||(35205245-35205296)
chr1 (20-87)||(35219391-35219458)
chr1 (22-73)||(35225248-35225299)
chr1 (35-73)||(34309711-34309749)
chr1 (264-326)||(35216054-35216116)
chr1 (35-73)||(45525802-45525840)
chr1 (246-315)||(35212056-35212125)
chr1 (20-73)||(35263325-35263378)
chr1 (376-436)||(35199901-35199961)
[»] chr3 (4 HSPs)
chr3 (20-73)||(53924103-53924156)
chr3 (35-67)||(19246792-19246824)
chr3 (36-67)||(17664390-17664421)
chr3 (36-73)||(23332100-23332137)
[»] chr7 (2 HSPs)
chr7 (21-73)||(38634928-38634980)
chr7 (18-87)||(38632178-38632247)


Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 40)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 18 - 582
Target Start/End: Complemental strand, 35248657 - 35248093
Alignment:
Q  18 aggataaacaccattgacttgtccccaaatactcagtatgcagcttatcttgtgttaagggtgattgatgacattggatttactagaagtcatgtggagt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||| || ||||  |||||||||||    
T  35248657 aggataaacaccattgacttgtccccaaatactcagtatgcagcttatcttgtgttcaaggtgattgatgtcattggatgtagtagacctcatgtggagt 35248558  T
Q  118 tctcagttggtgtcggaagtggccatcgtaatgttacaaatccttgttatcatactacaaaaattgtctgtttgtatcgaaatgtcgaaggtgtggctaa 217  Q
    ||||||||||||| |||| || ||||  | |||||||||||||||||||||||||| | |||||||||||||| |||||||||  | |||||| ||| ||    
T  35248557 tctcagttggtgttggaaatgaccatgatgatgttacaaatccttgttatcatacttccaaaattgtctgtttatatcgaaattaccaaggtggggcaaa 35248458  T
Q  218 caactcagtagaaggattgcaaagttctagtgtgagaagcgacagttggtttgagattgagatgggggagttcttcaattcaggcctagaaaatgaagtc 317  Q
    |||| |||| | ||||||||||||||||| ||||||||||||  | |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  35248457 caacacagtggtaggattgcaaagttctattgtgagaagcgatgggtggtttgagattgagatgggggagttcttcaatttaggcctagaaaatgaagtc 35248358  T
Q  318 aagatgaatatttcaatggagatgaaggatggtaaccagaatacacgtctcttatttcaaggaatggaagttagacctaagtaagacaattaagcaacat 417  Q
    ||||||||| |||  |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||    
T  35248357 aagatgaatgtttttatggagatgaaggatggtaaccagaatacacgtctcttatttgaaggaatagaagttagacctaagtaatacaattaagcaacat 35248258  T
Q  418 tcactaaactatgcaa-gggtcttgcgtcttggatggcagaacaacgtttgaagatttcaagttccaacttttcaacatattatatattattgttccaaa 516  Q
    ||||| |||||||||| |||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||    
T  35248257 tcactgaactatgcaaggggtcttatgtcttggatggcagaacaacgtttgaagatttgaagttccaacttttcaacatattatatattattgttctaaa 35248158  T
Q  517 ctctttctttgtaaaaatatatgtacactttatattgctcattgttcttcagtaaactgggatatc 582  Q
    |||||||||||| |||||||||  ||||||||||||||| |||||||||||||| ||| |||||||    
T  35248157 ctctttctttgt-aaaatatattcacactttatattgcttattgttcttcagtatactcggatatc 35248093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 230 - 570
Target Start/End: Complemental strand, 35263186 - 35262845
Alignment:
Q  230 aggattgcaaagttctagtgtgagaagcgacagttggtttgagattgagatgggggagttcttcaattcaggcctagaaaatgaag---tcaagatgaat 326  Q
    |||||||||| || ||||||||||||||||  | ||||| ||||||||||||||||||||||||| ||||||| ||||||||||||   || ||||||||    
T  35263186 aggattgcaacgtcctagtgtgagaagcgatgggtggttggagattgagatgggggagttcttcagttcaggcatagaaaatgaagaagtccagatgaat 35263087  T
Q  327 atttcaatggagatgaaggatggtaaccagaatacacgtctcttatttcaaggaatggaagttagacctaagtaagacaattaagcaacattcactaaac 426  Q
     | | |   ||||| |||| ||||||   ||| |   |||||||  || ||||||| ||| |||| ||||| ||| ||||||||||| |||| |||| ||    
T  35263086 ttgtta---gagataaaggctggtaattggaagagtggtctctttcttgaaggaatagaaattaggcctaaataacacaattaagcagcatttactatac 35262990  T
Q  427 tatgcaaggg-tcttgcgtcttggatggcagaacaacgtttgaagatttc-aagttccaacttttcaacatattatatattattgttccaaactctttct 524  Q
    |||||||||| ||||| ||||||| |||||||| || ||||  ||| ||  |||| |||||||||||||||| ||||||||||||||||||||| |||||    
T  35262989 tatgcaaggggtcttgtgtcttggttggcagaataatgtttctagagttggaagtcccaacttttcaacatactatatattattgttccaaactgtttct 35262890  T
Q  525 ttgtaaaaatatatgtacactttatattgctcattgttcttcagta 570  Q
    | || | | |||||  ||||||||||||||| | |||| |||||||    
T  35262889 tcgt-atagtatatacacactttatattgcttagtgttgttcagta 35262845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 376 - 498
Target Start/End: Complemental strand, 35476331 - 35476209
Alignment:
Q  376 aaggaatggaagttagacctaagtaagacaattaagcaacattcactaaactatgcaagggtcttgcgtcttggatggcagaacaacgtttgaagatttc 475  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||| || |||| | ||||||||||||||||||| ||||| |  | ||||||||||     
T  35476331 aaggaatagaagttagacctaaggaagacaattaagcaacattcactgaattatgtaggggtcttgcgtcttggatgacagaatactgcttgaagatttg 35476232  T
Q  476 aagttccaacttttcaacatatt 498  Q
    ||||  |||||||||||||||||    
T  35476231 aagtctcaacttttcaacatatt 35476209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 224 - 470
Target Start/End: Complemental strand, 35270617 - 35270368
Alignment:
Q  224 agtagaaggattgcaaagttctagtgtgagaagcgacagttggtttgagattgagatgggggagttcttcaattcaggcctagaaaat---gaagtcaag 320  Q
    |||||| ||||||||| || ||||||||||||| ||  | ||||| ||||||||||||||||||||||||||||||||| ||||||||   |||||| ||    
T  35270617 agtagacggattgcaacgtcctagtgtgagaagtgatgggtggttggagattgagatgggggagttcttcaattcaggcatagaaaatgaagaagtccag 35270518  T
Q  321 atgaatatttcaatggagatgaaggatggtaaccagaatacacgtctcttatttcaaggaatggaagttagacctaag--taagacaattaagcaacatt 418  Q
    |||||| |    ||  |||  |||| ||||||   ||| | | ||||  |  || ||||||| |||||||| ||||||  ||| |||||||| |||||||    
T  35270517 atgaatgt---gatacagacaaagggtggtaattggaagagaggtctagttcttgaaggaatagaagttaggcctaagtataacacaattaaccaacatt 35270421  T
Q  419 cactaaactatgcaa-gggtcttgcgtcttggatggcagaacaacgtttgaag 470  Q
    |||| |||||||||| |||||||| ||| |||||||||||||||||| |||||    
T  35270420 cactgaactatgcaaggggtcttgggtcgtggatggcagaacaacgtgtgaag 35270368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 230 - 326
Target Start/End: Complemental strand, 35190538 - 35190442
Alignment:
Q  230 aggattgcaaagttctagtgtgagaagcgacagttggtttgagattgagatgggggagttcttcaattcaggcctagaaaatgaagtcaagatgaat 326  Q
    |||||||||| || ||||||||||||| ||  | ||||| ||||||||||| || |||||||||||||||||||||||| |||||||| | ||||||    
T  35190538 aggattgcaacgtcctagtgtgagaagtgatgggtggttggagattgagatcggagagttcttcaattcaggcctagaagatgaagtccaaatgaat 35190442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 376 - 491
Target Start/End: Complemental strand, 45531597 - 45531481
Alignment:
Q  376 aaggaatggaagttagacctaagtaagacaattaagcaacattcactaaactatg-caagggtcttgcgtcttggatggcagaacaacgtttgaagattt 474  Q
    ||||||| |||||||| ||||||  ||||||||||||||| |||| | ||||||| || |||||||| ||||||||||| |||| |  | ||||||||||    
T  45531597 aaggaatagaagttaggcctaaggtagacaattaagcaactttcagtgaactatgtcatgggtcttgtgtcttggatggtagaatagtgcttgaagattt 45531498  T
Q  475 caagttccaacttttca 491  Q
     ||||||||||||||||    
T  45531497 gaagttccaacttttca 45531481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 35276709 - 35276637
Alignment:
Q  230 aggattgcaaagttctagtgtgagaagcgacagttggtttgagattgagatgggggagttcttcaattcaggc 302  Q
    |||||||||| || ||||||||||||| ||  | ||||| |||||||||||||||||||||||||||||||||    
T  35276709 aggattgcaacgtcctagtgtgagaagagatgggtggttggagattgagatgggggagttcttcaattcaggc 35276637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 232 - 315
Target Start/End: Complemental strand, 35225086 - 35225003
Alignment:
Q  232 gattgcaaagttctagtgtgagaagcgacagttggtttgagattgagatgggggagttcttcaattcaggcctagaaaatgaag 315  Q
    |||||||| || ||| ||||||||||||  | ||||| |||||||||||||| |||||||||| ||||||||||||| ||||||    
T  35225086 gattgcaacgtcctaatgtgagaagcgatggctggttagagattgagatgggagagttcttcatttcaggcctagaagatgaag 35225003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 20 - 130
Target Start/End: Complemental strand, 35252455 - 35252345
Alignment:
Q  20 gataaacaccattgacttgtccccaaatactcagtatgcagcttatcttgtgttaagggtgattgatgacattggatttactagaagtcatgtggagttc 119  Q
    |||||||||||||| ||||||||||||||||||||||| ||| ||||||||||| | | ||  ||||| | ||||| ||| ||||| || |||||| |||    
T  35252455 gataaacaccattgccttgtccccaaatactcagtatgtagcgtatcttgtgttcaagatggctgatgtctttggacttaatagaattcctgtggaattc 35252356  T
Q  120 tcagttggtgt 130  Q
     ||||| ||||    
T  35252355 acagttcgtgt 35252345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 177 - 308
Target Start/End: Complemental strand, 35147583 - 35147455
Alignment:
Q  177 aaaattgtctgtttgtatcgaaatgtcgaaggtgtggctaacaactcagtagaaggattgcaaagttctagtgtgagaagcgacagttggtttgagattg 276  Q
    ||||||||||||||| ||| |||||| ||||||| |    | |||  || || |||||||||| || ||||||||||||||||  | ||||| |||||||    
T  35147583 aaaattgtctgtttggatccaaatgtggaaggtgggcagcataacagagcagtaggattgcaacgtcctagtgtgagaagcgatgggtggttggagattg 35147484  T
Q  277 agatgggggagttcttcaattcaggcctagaa 308  Q
    |||||||||||   ||||||||||||||||||    
T  35147483 agatgggggag---ttcaattcaggcctagaa 35147455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 35476705 - 35476652
Alignment:
Q  20 gataaacaccattgacttgtccccaaatactcagtatgcagcttatcttgtgtt 73  Q
    ||||||||||| || |||||||||||||||||||||||| ||||||||||||||    
T  35476705 gataaacaccaatgccttgtccccaaatactcagtatgcggcttatcttgtgtt 35476652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 35200283 - 35200221
Alignment:
Q  36 ttgtccccaaatactcagtatgcagcttatcttgtgttaagggtgattgatgacattggattt 98  Q
    |||||||||||||||||||||||||||||||||||||| | | |||||| || | ||||||||    
T  35200283 ttgtccccaaatactcagtatgcagcttatcttgtgttcaagatgattggtggctttggattt 35200221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 249 - 326
Target Start/End: Complemental strand, 35208289 - 35208211
Alignment:
Q  249 gtgagaagcgacagttggtttgagattgagatgggggagttcttcaattca-ggcctagaaaatgaagtcaagatgaat 326  Q
    |||||||||||  | ||||| ||||||||||| |||||||||||||||||| ||||||||| | |||||| ||||||||    
T  35208289 gtgagaagcgatgggtggttggagattgagattggggagttcttcaattcatggcctagaagaagaagtccagatgaat 35208211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 376 - 444
Target Start/End: Complemental strand, 35147393 - 35147324
Alignment:
Q  376 aaggaatggaagttagacctaagtaagacaattaagcaacattcactaaactatgcaa-gggtcttgcgt 444  Q
    ||||||| |||||||| |||||||||||| ||||||||||||||  | |||||||||| |||||||||||    
T  35147393 aaggaatagaagttaggcctaagtaagaccattaagcaacattccatgaactatgcaaggggtcttgcgt 35147324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 230 - 315
Target Start/End: Complemental strand, 35200107 - 35200022
Alignment:
Q  230 aggattgcaaagttctagtgtgagaagcgacagttggtttgagattgagatgggggagttcttcaattcaggcctagaaaatgaag 315  Q
    |||||||||| |  ||||||||||||||||  | ||||| |||||||| || |||||||||||||||||||||  |||| ||||||    
T  35200107 aggattgcaacgccctagtgtgagaagcgatgggtggttggagattgaaatcggggagttcttcaattcaggcgaagaagatgaag 35200022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 35295663 - 35295716
Alignment:
Q  20 gataaacaccattgacttgtccccaaatactcagtatgcagcttatcttgtgtt 73  Q
    ||||||||||  || |||||||||||||||||| ||||||||||||||||||||    
T  35295663 gataaacacccctgccttgtccccaaatactcaatatgcagcttatcttgtgtt 35295716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 270 - 315
Target Start/End: Complemental strand, 45531700 - 45531655
Alignment:
Q  270 gagattgagatgggggagttcttcaattcaggcctagaaaatgaag 315  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||    
T  45531700 gagattgagatgggagagttcttcaattcaggccttgaaaatgaag 45531655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 376 - 447
Target Start/End: Complemental strand, 35190401 - 35190329
Alignment:
Q  376 aaggaatggaagttagacctaagtaagacaattaagcaacattcactaaactatgcaa-gggtcttgcgtctt 447  Q
    ||||||| |||||||| |||||||||||| ||| ||||||||||  | |||||||||| ||||||||||||||    
T  35190401 aaggaatagaagttaggcctaagtaagaccattcagcaacattccgtgaactatgcaaggggtcttgcgtctt 35190329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 35190730 - 35190663
Alignment:
Q  20 gataaacaccattgacttgtccccaaatactcagtatgcagcttatcttgtgttaagggtgattgatg 87  Q
    |||||| ||| ||| ||||||||||||||| |||||||| |||||||||||||| | | |||||||||    
T  35190730 gataaatacccttgccttgtccccaaatacccagtatgcggcttatcttgtgttcaagatgattgatg 35190663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 478 - 525
Target Start/End: Complemental strand, 35252030 - 35251983
Alignment:
Q  478 gttccaacttttcaacatattatatattattgttccaaactctttctt 525  Q
    |||||||||| |||||||| ||||||||||||||||||||| ||||||    
T  35252030 gttccaacttctcaacatactatatattattgttccaaactgtttctt 35251983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 264 - 315
Target Start/End: Complemental strand, 35252217 - 35252166
Alignment:
Q  264 tggtttgagattgagatgggggagttcttcaattcaggcctagaaaatgaag 315  Q
    ||||||||||||||||| |||||||||||||||| |||| ||||| ||||||    
T  35252217 tggtttgagattgagattggggagttcttcaatttaggcatagaatatgaag 35252166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 244 - 315
Target Start/End: Original strand, 35295863 - 35295934
Alignment:
Q  244 ctagtgtgagaagcgacagttggtttgagattgagatgggggagttcttcaattcaggcctagaaaatgaag 315  Q
    ||||||||||||| ||  | ||||| |||||||||||||| |||||||||||||||||| ||| | ||||||    
T  35295863 ctagtgtgagaagtgatgggtggttggagattgagatgggagagttcttcaattcaggcttagtagatgaag 35295934  T

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Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 304
Target Start/End: Complemental strand, 35189486 - 35189412
Alignment:
Q  230 aggattgcaaagttctagtgtgagaagcgacagttggtttgagattgagatgggggagttcttcaattcaggcct 304  Q
    |||||||||| || || |||||||||| || || ||||| |||||||  ||||||||||||||||||||| ||||    
T  35189486 aggattgcaatgtccttgtgtgagaagtgataggtggttggagattggaatgggggagttcttcaattcaagcct 35189412  T

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Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 316
Target Start/End: Complemental strand, 35281448 - 35281402
Alignment:
Q  270 gagattgagatgggggagttcttcaattcaggcctagaaaatgaagt 316  Q
    ||||| |||||||| |||||||||||||||||||||||| |||||||    
T  35281448 gagatcgagatgggagagttcttcaattcaggcctagaagatgaagt 35281402  T

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Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 73
Target Start/End: Complemental strand, 45531950 - 45531912
Alignment:
Q  35 cttgtccccaaatactcagtatgcagcttatcttgtgtt 73  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  45531950 cttgtccccaaatactcaatatgcagcttatcttgtgtt 45531912  T

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Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 230 - 315
Target Start/End: Complemental strand, 34309524 - 34309439
Alignment:
Q  230 aggattgcaaagttctagtgtgagaagcgacagttggtttgagattgagatgggggagttcttcaattcaggcctagaaaatgaag 315  Q
    |||||||||| || ||| ||| ||||| ||  | ||||| |||||||||||||| ||||||||||||||| |||| ||| ||||||    
T  34309524 aggattgcaacgtcctaatgtaagaagtgatggatggttggagattgagatgggagagttcttcaattcaagccttgaagatgaag 34309439  T

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Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 35147716 - 35147663
Alignment:
Q  20 gataaacaccattgacttgtccccaaatactcagtatgcagcttatcttgtgtt 73  Q
    |||||||||| ||  ||||||||||||||| |||||||| ||||||||||||||    
T  35147716 gataaacacccttagcttgtccccaaatacccagtatgcggcttatcttgtgtt 35147663  T

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Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 35270803 - 35270750
Alignment:
Q  20 gataaacaccattgacttgtccccaaatactcagtatgcagcttatcttgtgtt 73  Q
    |||||||||||| | | |||||||||||||||| |||||||||||| |||||||    
T  35270803 gataaacaccatcgtcctgtccccaaatactcaatatgcagcttatgttgtgtt 35270750  T

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Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 35216303 - 35216251
Alignment:
Q  35 cttgtccccaaatactcagtatgcagcttatcttgtgttaagggtgattgatg 87  Q
    |||||| |||||||||||||||||| ||||||||||||| | | |||||||||    
T  35216303 cttgtctccaaatactcagtatgcaacttatcttgtgtttaagatgattgatg 35216251  T

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Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 315
Target Start/End: Complemental strand, 8639042 - 8638991
Alignment:
Q  264 tggtttgagattgagatgggggagttcttcaattcaggcctagaaaatgaag 315  Q
    ||||| |||| ||||||||| |||||||||||||||||| ||||| ||||||    
T  8639042 tggttggagactgagatgggagagttcttcaattcaggcttagaagatgaag 8638991  T

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Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 315
Target Start/End: Complemental strand, 35194650 - 35194583
Alignment:
Q  248 tgtgagaagcgacagttggtttgagattgagatgggggagttcttcaattcaggcctagaaaatgaag 315  Q
    ||||||||||||  | ||||| |||||||| |||||||||||||||||| || |||| ||| ||||||    
T  35194650 tgtgagaagcgatgggtggttggagattgaaatgggggagttcttcaatccaagccttgaagatgaag 35194583  T

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Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 35205296 - 35205245
Alignment:
Q  36 ttgtccccaaatactcagtatgcagcttatcttgtgttaagggtgattgatg 87  Q
    ||||| ||||||||||| |||||||||||||||||||| | | |||||||||    
T  35205296 ttgtctccaaatactcaatatgcagcttatcttgtgttcaagatgattgatg 35205245  T

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Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 87
Target Start/End: Complemental strand, 35219458 - 35219391
Alignment:
Q  20 gataaacaccattgacttgtccccaaatactcagtatgcagcttatcttgtgttaagggtgattgatg 87  Q
    |||||||||| ||  |||||| |||||||||| ||||||| ||||||||||||| | | |||||||||    
T  35219458 gataaacacccttaccttgtctccaaatactctgtatgcaacttatcttgtgttcaagatgattgatg 35219391  T

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Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 35225299 - 35225248
Alignment:
Q  22 taaacaccattgacttgtccccaaatactcagtatgcagcttatcttgtgtt 73  Q
    |||||||| ||| ||||||||||||||||| ||||| | |||||||||||||    
T  35225299 taaacacccttgccttgtccccaaatactcggtatgtaacttatcttgtgtt 35225248  T

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Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 35 - 73
Target Start/End: Complemental strand, 34309749 - 34309711
Alignment:
Q  35 cttgtccccaaatactcagtatgcagcttatcttgtgtt 73  Q
    |||||||||||||||||||||||| |||||||| |||||    
T  34309749 cttgtccccaaatactcagtatgcggcttatctcgtgtt 34309711  T

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Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 264 - 326
Target Start/End: Complemental strand, 35216116 - 35216054
Alignment:
Q  264 tggtttgagattgagatgggggagttcttcaattcaggcctagaaaatgaagtcaagatgaat 326  Q
    ||||| |||||||||||  | ||||||||||||||||||| |||| ||||||||  |||||||    
T  35216116 tggttggagattgagatcagagagttcttcaattcaggccaagaagatgaagtcctgatgaat 35216054  T

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Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 35 - 73
Target Start/End: Complemental strand, 45525840 - 45525802
Alignment:
Q  35 cttgtccccaaatactcagtatgcagcttatcttgtgtt 73  Q
    |||||| |||||||||||||||||||||||||| |||||    
T  45525840 cttgtctccaaatactcagtatgcagcttatctcgtgtt 45525802  T

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Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 315
Target Start/End: Complemental strand, 35212125 - 35212056
Alignment:
Q  246 agtgtgagaagcgacagttggtttgagattgagatgggggagttcttcaattcaggcctagaaaatgaag 315  Q
    ||||||||||| ||  | ||||| |||||||||||||| ||||||||||||||  |||| ||| ||||||    
T  35212125 agtgtgagaagtgatgggtggttggagattgagatgggagagttcttcaattctagccttgaagatgaag 35212056  T

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Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 35263378 - 35263325
Alignment:
Q  20 gataaacaccattgacttgtccccaaatactcagtatgcagcttatcttgtgtt 73  Q
    ||||||||||||||   |||||||| ||||||| |||||||||||| |||||||    
T  35263378 gataaacaccattgttctgtccccatatactcaatatgcagcttatgttgtgtt 35263325  T

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Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 376 - 436
Target Start/End: Complemental strand, 35199961 - 35199901
Alignment:
Q  376 aaggaatggaagttagacctaagtaagacaattaagcaacattcactaaactatgcaaggg 436  Q
    ||||||| ||||| || ||||||||||||||||||| |||||||  | ||||||| |||||    
T  35199961 aaggaatagaagtcaggcctaagtaagacaattaagtaacattccatgaactatgaaaggg 35199901  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 53924103 - 53924156
Alignment:
Q  20 gataaacaccattgacttgtccccaaatactcagtatgcagcttatcttgtgtt 73  Q
    |||||||||| ||| ||||||||||||||||| |||||| ||||||||||||||    
T  53924103 gataaacacccttgtcttgtccccaaatactcggtatgcggcttatcttgtgtt 53924156  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 19246792 - 19246824
Alignment:
Q  35 cttgtccccaaatactcagtatgcagcttatct 67  Q
    |||||||||||||||||||||||||||||||||    
T  19246792 cttgtccccaaatactcagtatgcagcttatct 19246824  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 67
Target Start/End: Original strand, 17664390 - 17664421
Alignment:
Q  36 ttgtccccaaatactcagtatgcagcttatct 67  Q
    ||||||||||||||||||||||||||||||||    
T  17664390 ttgtccccaaatactcagtatgcagcttatct 17664421  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 73
Target Start/End: Complemental strand, 23332137 - 23332100
Alignment:
Q  36 ttgtccccaaatactcagtatgcagcttatcttgtgtt 73  Q
    ||||||||||||||||||||||||||||| || |||||    
T  23332137 ttgtccccaaatactcagtatgcagcttacctcgtgtt 23332100  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 38634980 - 38634928
Alignment:
Q  21 ataaacaccattgacttgtccccaaatactcagtatgcagcttatcttgtgtt 73  Q
    ||||||||  || ||||||||| |||||||||||||| |||||||||||||||    
T  38634980 ataaacactctttacttgtcccgaaatactcagtatgtagcttatcttgtgtt 38634928  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 38632247 - 38632178
Alignment:
Q  18 aggataaacaccattgacttgtccccaaatactcagtatgcagcttatcttgtgttaagggtgattgatg 87  Q
    |||||| ||||  ||| |||||| | |||||||||||||| ||||||||||||||| | | |||||||||    
T  38632247 aggatagacactcttgccttgtctcgaaatactcagtatgtagcttatcttgtgttcaagttgattgatg 38632178  T

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