View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7804_high_6 (Length: 443)
Name: NF7804_high_6
Description: NF7804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7804_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Original strand, 26160587 - 26161005
Alignment:
| Q |
1 |
ttaaacatacttaatatcttagcatatttctaatattcaaaactacgagacacaccacttgtatagctatcactgatgcaactggcgtctagaaccgggt |
100 |
Q |
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| T |
26160587 |
ttaaacatacttaatttcttagcatatttctaatattcaaaactacgagacacaccacttgtatagctatcactgatgcaaccggcgtctagaacctggt |
26160686 |
T |
|
| Q |
101 |
ctgtccagcctgacatggccgaaacaaactcaccctccgctgctctgatgcaacaatcgtagctagtaaagtttaatgagtgattgaagtcggcgtctat |
200 |
Q |
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| T |
26160687 |
ttgtccagcctgacatggccgaaacaaactcaccctccgctgctctgatgcaacaaccgtagctagtaaagtttaatgagtgatt-------------at |
26160773 |
T |
|
| Q |
201 |
gttgcatttcacgcaaccttgcagaggtggttcctgaatgtcacagctgtgcacagtaacagcacgaaccgcgtgaaatgcaacgtgcacaacattcgca |
300 |
Q |
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| T |
26160774 |
gttgcatttcacgcaaccttgcagaggtggttcctgaatgtcacagctgtgcacagtaacagcacgaaccgcgtgaaatgcaacgtgcacaacattcaca |
26160873 |
T |
|
| Q |
301 |
tgctatagggcattgaacatgacgtgcagtcagatttgagcgagttggttgacatccgtgacaagtccttcaagctagattacgaacatttggtgtctcg |
400 |
Q |
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| T |
26160874 |
tgctacagggcattgaacatgacgtgcagtcagatttgagcgagttggttgacatccgtgacaagtccttcaagctagattacgaacctttggtgtctcg |
26160973 |
T |
|
| Q |
401 |
cacaccacatgctatcccaatctccctcaaca |
432 |
Q |
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| T |
26160974 |
cacaccacatgctatcccaatctccctcaaca |
26161005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 103; Significance: 4e-51; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 92 - 242
Target Start/End: Original strand, 32391189 - 32391338
Alignment:
| Q |
92 |
gaaccgggtctgtccagcctgacatggccgaaacaaactcaccctccgctgctctgatgcaacaatcgtagctagtaaagtttaatgagtgattgaagtc |
191 |
Q |
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|||||||| ||||||||||||||||||| |||| || |||||||| | | ||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32391189 |
gaaccgggactgtccagcctgacatggcagaaattaagtcaccctc-gttcctctgatgcaacatccgtagctagtaaagtttaatgagtgattgaagtc |
32391287 |
T |
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| Q |
192 |
ggcgtctatgttgcatttcacgcaaccttgcagaggtggttcctgaatgtc |
242 |
Q |
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| T |
32391288 |
ggcgtctatgttgcatttcacgcaaccttgcagaggtggttcttgaatgtc |
32391338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 294 - 432
Target Start/End: Original strand, 32391544 - 32391676
Alignment:
| Q |
294 |
attcgcatgctatagggcattgaacatgacgtgcagtcagatttgagcgagttggttgacatccgtgacaagtccttcaagctagattacgaacatttgg |
393 |
Q |
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| T |
32391544 |
attcgcacgctacagggcattgaacatgacgtgctgtcagatttgagcgagttggttgacaaccgtgaca------tcaagctagatcacgaacttttgg |
32391637 |
T |
|
| Q |
394 |
tgtctcgcacaccacatgctatcccaatctccctcaaca |
432 |
Q |
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| T |
32391638 |
tgtcttgcacaccacatgctatcccaatttccctcaaca |
32391676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 296
Target Start/End: Original strand, 32391437 - 32391487
Alignment:
| Q |
246 |
gctgtgcacagtaacagcacgaaccgcgtgaaatgcaacgtgcacaacatt |
296 |
Q |
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| T |
32391437 |
gctgtgcacactaacagcacgaacaatgtgaaatgcaacgtgcccaacatt |
32391487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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