View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7804_low_10 (Length: 339)

Name: NF7804_low_10
Description: NF7804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7804_low_10
NF7804_low_10
[»] chr6 (1 HSPs)
chr6 (19-225)||(13692576-13692784)
[»] chr1 (9 HSPs)
chr1 (162-244)||(42747731-42747813)
chr1 (205-247)||(5923888-5923930)
chr1 (171-245)||(21516465-21516539)
chr1 (172-245)||(31117556-31117629)
chr1 (208-241)||(15942340-15942373)
chr1 (171-244)||(20791772-20791845)
chr1 (205-246)||(28870462-28870503)
chr1 (172-245)||(32602976-32603049)
chr1 (206-246)||(3161024-3161064)
[»] chr7 (3 HSPs)
chr7 (190-245)||(31740618-31740673)
chr7 (180-238)||(42967964-42968022)
chr7 (192-246)||(44235292-44235346)
[»] chr4 (4 HSPs)
chr4 (190-245)||(30802463-30802518)
chr4 (163-245)||(47789319-47789401)
chr4 (203-247)||(2103186-2103230)
chr4 (205-245)||(30070330-30070370)
[»] chr3 (3 HSPs)
chr3 (163-242)||(43822713-43822792)
chr3 (206-243)||(20873056-20873093)
chr3 (190-245)||(18084855-18084910)
[»] chr5 (2 HSPs)
chr5 (173-245)||(34640215-34640287)
chr5 (206-246)||(31812165-31812205)
[»] chr8 (1 HSPs)
chr8 (203-245)||(12524593-12524635)
[»] chr2 (1 HSPs)
chr2 (164-246)||(21938074-21938156)


Alignment Details
Target: chr6 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 13692784 - 13692576
Alignment:
Q  19 ttccatctctcttcttttcttcttgttcctaacaaaatacatctatgcactttagttacatatacatatacctacggaaaccaaacaattgtgcttggac 118  Q
    ||||||||||||| |||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||| | |  ||| |||||||||| ||||||||    
T  13692784 ttccatctctcttattttcttcttattcctaataaaatacatctatgtactttagttacatatacatatacatccacaaaacaaacaattgcgcttggac 13692685  T
Q  119 atagtg--ccttgtttgtaaaaaatagcagataattgataaatagacttataacggatgacttataagttaggttataggtgatatcagataagttagct 216  Q
    | ||||   || ||| |||||||||||| |||||||||||| |    ||||| ||||||||||||||||||  |||||| |||||  |||||||||||||    
T  13692684 acagtggctctggttagtaaaaaatagcggataattgataagttagtttatagcggatgacttataagttaatttatagttgatagtagataagttagct 13692585  T
Q  217 aattgaatt 225  Q
     || |||||    
T  13692584 gatagaatt 13692576  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 162 - 244
Target Start/End: Complemental strand, 42747813 - 42747731
Alignment:
Q  162 acttataacggatgacttataagttaggttataggtgatatcagataagttagctaattgaatttttagtgtttggtaaaatt 244  Q
    ||||||| | ||||||||||||| ||| |||||| |||||   |||||| ||| ||||||||||| |||||||||||||||||    
T  42747813 acttatagctgatgacttataagctagtttatagctgatagaggataagctagttaattgaatttgtagtgtttggtaaaatt 42747731  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 247
Target Start/End: Complemental strand, 5923930 - 5923888
Alignment:
Q  205 gataagttagctaattgaatttttagtgtttggtaaaattaat 247  Q
    |||||| ||||| ||||||||||||||||||||||||||||||    
T  5923930 gataagctagctgattgaatttttagtgtttggtaaaattaat 5923888  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 245
Target Start/End: Original strand, 21516465 - 21516539
Alignment:
Q  171 ggatgacttataagttaggttataggtgatatcagataagttagctaattgaatttttagtgtttggtaaaatta 245  Q
    |||||||||||||| ||| |||||| |||||   |||||| ||||| ||||||||| | ||||||||||||||||    
T  21516465 ggatgacttataagctagcttatagatgatagtggataagctagctgattgaatttgttgtgtttggtaaaatta 21516539  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 172 - 245
Target Start/End: Original strand, 31117556 - 31117629
Alignment:
Q  172 gatgacttataagttaggttataggtgatatcagataagttagctaattgaatttttagtgtttggtaaaatta 245  Q
    ||||||||||||| ||| |||||| ||| | || ||||| ||||| ||||||||| ||||||||| ||||||||    
T  31117556 gatgacttataagctagcttatagttgagagcaaataagctagctgattgaatttgtagtgtttgataaaatta 31117629  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 241
Target Start/End: Original strand, 15942340 - 15942373
Alignment:
Q  208 aagttagctaattgaatttttagtgtttggtaaa 241  Q
    ||||||||||||||||||| ||||||||||||||    
T  15942340 aagttagctaattgaatttgtagtgtttggtaaa 15942373  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 244
Target Start/End: Original strand, 20791772 - 20791845
Alignment:
Q  171 ggatgacttataagttaggttataggtgatatcagataagttagctaattgaatttttagtgtttggtaaaatt 244  Q
    |||||||||||||| ||| |||||| | |||   | |||| ||||||| ||||||| |||||||||||||||||    
T  20791772 ggatgacttataagctagattatagctcatagtgggtaagctagctaactgaatttgtagtgtttggtaaaatt 20791845  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 28870462 - 28870503
Alignment:
Q  205 gataagttagctaattgaatttttagtgtttggtaaaattaa 246  Q
    |||||| ||| | |||||||||||||||||||||||||||||    
T  28870462 gataagctagtttattgaatttttagtgtttggtaaaattaa 28870503  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 245
Target Start/End: Complemental strand, 32603049 - 32602976
Alignment:
Q  172 gatgacttataagttaggttataggtgatatcagataagttagctaattgaatttttagtgtttggtaaaatta 245  Q
    ||||||||||||||||  ||||||  |||| |  |||| |||||| ||||||||| |||||||| |||||||||    
T  32603049 gatgacttataagttaacttatagccgatagcgaataaattagctgattgaatttgtagtgtttagtaaaatta 32602976  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 246
Target Start/End: Complemental strand, 3161064 - 3161024
Alignment:
Q  206 ataagttagctaattgaatttttagtgtttggtaaaattaa 246  Q
    ||||| ||||| ||||||||| |||||||||||||||||||    
T  3161064 ataagctagctgattgaatttgtagtgtttggtaaaattaa 3161024  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 245
Target Start/End: Complemental strand, 31740673 - 31740618
Alignment:
Q  190 ttataggtgatatcagataagttagctaattgaatttttagtgtttggtaaaatta 245  Q
    |||||| ||||| |||||||||||||| |||||||||  |||||||||||||||||    
T  31740673 ttatagatgatagcagataagttagcttattgaatttgcagtgtttggtaaaatta 31740618  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 238
Target Start/End: Complemental strand, 42968022 - 42967964
Alignment:
Q  180 ataagttaggttataggtgatatcagataagttagctaattgaatttttagtgtttggt 238  Q
    ||||||||| |||||||||||| |||||||| ||||  ||||||||| || ||||||||    
T  42968022 ataagttagcttataggtgatagcagataagctagccgattgaatttgtaatgtttggt 42967964  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 44235292 - 44235346
Alignment:
Q  192 ataggtgatatcagataagttagctaattgaatttttagtgtttggtaaaattaa 246  Q
    |||| ||||| |||||||||||||| ||| ||||| |||||||||||||| ||||    
T  44235292 atagttgatagcagataagttagctgatttaatttgtagtgtttggtaaagttaa 44235346  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 245
Target Start/End: Complemental strand, 30802518 - 30802463
Alignment:
Q  190 ttataggtgatatcagataagttagctaattgaatttttagtgtttggtaaaatta 245  Q
    |||||| ||||| | |||||||||||| ||||||||| ||||||||||||||||||    
T  30802518 ttatagatgatagcggataagttagcttattgaatttgtagtgtttggtaaaatta 30802463  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 245
Target Start/End: Original strand, 47789319 - 47789401
Alignment:
Q  163 cttataacggatgacttataagttaggttataggtgatatcagataagttagctaattgaatttttagtgtttggtaaaatta 245  Q
    |||||||| |||||||||||||  ||||| ||| ||||| | |||||| || || ||||| ||| ||||||||||||||||||    
T  47789319 cttataacagatgacttataagccaggttgtagctgatagcggataagctaactgattgattttgtagtgtttggtaaaatta 47789401  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 247
Target Start/End: Original strand, 2103186 - 2103230
Alignment:
Q  203 cagataagttagctaattgaatttttagtgtttggtaaaattaat 247  Q
    |||||||| ||||| ||||||||| ||||||||||||||||||||    
T  2103186 cagataagctagcttattgaatttgtagtgtttggtaaaattaat 2103230  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 245
Target Start/End: Complemental strand, 30070370 - 30070330
Alignment:
Q  205 gataagttagctaattgaatttttagtgtttggtaaaatta 245  Q
    |||||| ||||||||||||||| ||||||||||||||||||    
T  30070370 gataagctagctaattgaatttgtagtgtttggtaaaatta 30070330  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 242
Target Start/End: Complemental strand, 43822792 - 43822713
Alignment:
Q  163 cttataacggatgacttataagttaggttataggtgatatcagataagttagctaattgaatttttagtgtttggtaaaa 242  Q
    |||||| ||||||||| ||||| ||| |||||| ||||| | |||||  |||||||||||||||  ||||||||||||||    
T  43822792 cttatagcggatgactgataagctagcttatagctgatagcggataaactagctaattgaatttgaagtgtttggtaaaa 43822713  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 206 - 243
Target Start/End: Original strand, 20873056 - 20873093
Alignment:
Q  206 ataagttagctaattgaatttttagtgtttggtaaaat 243  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  20873056 ataagttagcttattgaatttttagtgtttggtaaaat 20873093  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 190 - 245
Target Start/End: Original strand, 18084855 - 18084910
Alignment:
Q  190 ttataggtgatatcagataagttagctaattgaatttttagtgtttggtaaaatta 245  Q
    |||||| ||||| | |||||||||||| |||||||||  |||||||||||||||||    
T  18084855 ttatagatgatagcggataagttagctgattgaatttgcagtgtttggtaaaatta 18084910  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 34640287 - 34640215
Alignment:
Q  173 atgacttataagttaggttataggtgatatcagataagttagctaattgaatttttagtgtttggtaaaatta 245  Q
    ||||| |||||| ||| |||||| ||||| | |||||| ||||| ||||||||| || |||||||||||||||    
T  34640287 atgacctataagctagcttatagctgatagcggataagctagcttattgaatttgtaatgtttggtaaaatta 34640215  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 206 - 246
Target Start/End: Complemental strand, 31812205 - 31812165
Alignment:
Q  206 ataagttagctaattgaatttttagtgtttggtaaaattaa 246  Q
    ||||| ||||| ||||||||| |||||||||||||||||||    
T  31812205 ataagctagctgattgaatttgtagtgtttggtaaaattaa 31812165  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 245
Target Start/End: Original strand, 12524593 - 12524635
Alignment:
Q  203 cagataagttagctaattgaatttttagtgtttggtaaaatta 245  Q
    ||||||| |||||| ||||||||| ||||||||||||||||||    
T  12524593 cagataatttagctgattgaatttgtagtgtttggtaaaatta 12524635  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 246
Target Start/End: Complemental strand, 21938156 - 21938074
Alignment:
Q  164 ttataacggatgacttataagttaggttataggtgatatcagataagttagctaattgaatttttagtgtttggtaaaattaa 246  Q
    ||||||| ||||||||||||||||| |||||| ||||   | |||| |||| | |||||||||  ||||||| ||||||||||    
T  21938156 ttataacagatgacttataagttagtttatagttgatgataaataaattagttgattgaatttgcagtgtttagtaaaattaa 21938074  T

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