View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7804_low_12 (Length: 292)
Name: NF7804_low_12
Description: NF7804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7804_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 9 - 281
Target Start/End: Complemental strand, 9143275 - 9142999
Alignment:
| Q |
9 |
tggacatcagaataaggatcttaccaataaggatgatcatggaataaaagtcattaggtactttattcttgaaaaacaacaatattcttgatatatttca |
108 |
Q |
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| T |
9143275 |
tggacatcagagtaaggatcttcccaataaggatgatcatggaataaaagtcattaggtactttattcttgaaaaacaacaatattcttgatatatttca |
9143176 |
T |
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| Q |
109 |
aacactaataagaaattcaaagtgacagtta----cttgtcctgccactgcaataaatcatctttcaattccaactttccaaccaaaatttaaaagtgtt |
204 |
Q |
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| T |
9143175 |
aacactaaaaagaaattcaaagtgacagaaatcatcttatcctgccactacaataaatcatctttcaatttcaactttccaaccaaaatttaaaagtgtt |
9143076 |
T |
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| Q |
205 |
tgggataaaatcccaccgagtaaatttattaaacaaaatttgctgcagcaattagtctacctctcggaacttaaatg |
281 |
Q |
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| T |
9143075 |
tgggataaaatcccaccgagtaaatttattaaacaaaatttgctgcagcaattagtctaactctcggaacttaaatg |
9142999 |
T |
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