View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7804_low_16 (Length: 250)
Name: NF7804_low_16
Description: NF7804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7804_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 26161004 - 26161238
Alignment:
| Q |
1 |
catggaacttgtcgactccataaacttcatcatataattacacccggatcaaaccaaataaataccattcctctccctgtccagattaaattatccactt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26161004 |
catggaacttgtcgactccataaacttcatcatataattacacccggatcaaaccaaataaataccattcctctccctgtccagattaaattatccactt |
26161103 |
T |
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| Q |
101 |
caatagtaggaaaaagtgggtctgataaaatatgctggaaaacatgagaagggaacaaaggttgaatcttatcaacatcccacctcctctcacacgggat |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
26161104 |
caatagtaggaaaaagtgggtccgataaaatatgctggaaaacatgagaagggaacaaagattgaatcttatcaacatcccagctcctctcacacgggat |
26161203 |
T |
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| Q |
201 |
cattagatatctcactagtatgtcataaacctcat |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
26161204 |
cattagatatctcactagtatgtcataaacctcat |
26161238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 32391675 - 32391908
Alignment:
| Q |
1 |
catggaacttgtcgactccataaacttcatcatataattacacccggatcaaaccaaataaataccattcctctc-cctgtccagattaaattatccact |
99 |
Q |
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|||||| |||||| ||||||||||| |||||||||||||| ||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32391675 |
catggaccttgtcaactccataaacctcatcatataattatacccggaacaaaccgaataaataccattcctctcgcctgtccagattaaattatccatc |
32391774 |
T |
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| Q |
100 |
tcaatagtaggaaaaagtgggtctgataaaatatgctggaaaacatgagaagggaacaaaggttgaatcttatcaacatcccacctcctctcacacggga |
199 |
Q |
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|||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||| || ||||||| |||||| | ||||||||||| | ||| |
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| T |
32391775 |
tcaatattaggaaaaagtgggtcctataaaatatgctggacaacatgagaagggaacaaagattaaatcttaccaacattctacctcctctcaaccagga |
32391874 |
T |
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| Q |
200 |
tcattagatatctcactagtatgtcataaacctcat |
235 |
Q |
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||||||||| |||||| |||||||||||||||||| |
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| T |
32391875 |
tcattagatctctcac--gtatgtcataaacctcat |
32391908 |
T |
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