View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7804_low_17 (Length: 241)
Name: NF7804_low_17
Description: NF7804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7804_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 14644174 - 14644397
Alignment:
| Q |
1 |
accaaggaagtgtttgtatgcacctctcttgtctctttgtgcaaaacaagtaaatatcaatctattttgctaaattttgttttgagacaataattccctc |
100 |
Q |
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| T |
14644174 |
accaaggaagtgtttgtatgcacctctcttgtctctttgtgcaaaacaagtaaatatcaatctattttgctaaattttgttttgagacaataattccctc |
14644273 |
T |
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| Q |
101 |
tgtgtatatcttgcaaacatgtgattgggcaaagtaacgagtaggtgctccctttctatgtgtttataatgataatttgcaatatatggttttaagcaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14644274 |
tgtgtatatcttgcaaacatgtgattgggcaaagtaacgagtagctgctccctttctatgtgtttataatgataatttgcaatatatggttttaagcaga |
14644373 |
T |
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| Q |
201 |
taaaataatattagaataaaaatt |
224 |
Q |
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|||||||| || |||||||||||| |
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| T |
14644374 |
taaaataaaatgagaataaaaatt |
14644397 |
T |
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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 15097705 - 15097508
Alignment:
| Q |
1 |
accaaggaagtgtttgtatgcacctctcttgtctctttgtgcaaaacaagtaaatatcaatctattttgctaaattttgttttgagacaataattccctc |
100 |
Q |
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||||||||||||| ||||||| |||||||| ||| |||||||| |||||| | |||| || || |||||||||||| | ||||||||| || ||| |
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| T |
15097705 |
accaaggaagtgtatgtatgccactctcttgcctccttgtgcaacgtaagtaattgtcaacctcttcagctaaattttgtaataagacaataaatctctc |
15097606 |
T |
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| Q |
101 |
tgtgtatatcttgcaaacatgtgattgggcaaagtaacgagtaggtgctccctttctatgtgtttataatgataatttgcaatatatggttttaagca |
198 |
Q |
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| T |
15097605 |
tgtatatttcttgctaacatatgattgggcaaagtaataagtagcttctccctgtatatacgtttataatggtcatttgcaatttatggtttgaagca |
15097508 |
T |
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