View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7804_low_20 (Length: 210)
Name: NF7804_low_20
Description: NF7804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7804_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 5e-89; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 15 - 192
Target Start/End: Complemental strand, 31354087 - 31353910
Alignment:
| Q |
15 |
gtgttgatgggttgctaattaacatttgaactttagagttacaagttgtattccgacaaagaatcaatctgttggctgaagataaaaccttaccttattt |
114 |
Q |
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| T |
31354087 |
gtgttgatgggttgctaattaacatttgaactttagagttactagttgtattccgacaaagaatcaatctgttggctgaagataaaaccttaccttattt |
31353988 |
T |
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| Q |
115 |
agctaagtattcaagaacatctttggaaacacccaaagaattatattcttaaggtaaatgatgtaccttagcaatctt |
192 |
Q |
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| T |
31353987 |
agccaagtattcaagaacatctttggaaacacccaaagaattatattcttcaggtaaatgatgtaccttagcaatctt |
31353910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 31343759 - 31343585
Alignment:
| Q |
15 |
gtgttgatgggttgctaattaacatttgaactttagagttacaagttgtattccgacaaagaatcaatctgttggctgaagataaaaccttaccttattt |
114 |
Q |
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| T |
31343759 |
gtgttgatgggttgctaattaacatttgaactttagagttactagttttattccgacaaagaatcaatccgttggccgaagataaaatcttaccttattt |
31343660 |
T |
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| Q |
115 |
agctaagtattcaagaacatctttggaaacacccaaagaattatattcttaaggtaaatgatgtaccttagcaat |
189 |
Q |
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| T |
31343659 |
agctaagtattcaagaacatatttggaaacacccaaagaattatcttcttcaggtaaattatgtaccttggcaat |
31343585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 156
Target Start/End: Original strand, 31355517 - 31355637
Alignment:
| Q |
36 |
acatttgaactttagagttacaagttgtattccgacaaagaatcaatctgttggctgaagataaaaccttaccttatttagctaagtattcaagaacatc |
135 |
Q |
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| T |
31355517 |
acatttgaacttcagagttatttgttgtatcatgacaaaaaatcaatatgttggctgaaaataaaatcttagtatatttaatcaaatattcaaaaacttc |
31355616 |
T |
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| Q |
136 |
tttggaaacacccaaagaatt |
156 |
Q |
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| T |
31355617 |
tttggaaccactcaaagaatt |
31355637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 105
Target Start/End: Original strand, 31344582 - 31344618
Alignment:
| Q |
69 |
gacaaagaatcaatctgttggctgaagataaaacctt |
105 |
Q |
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| T |
31344582 |
gacaaaaaatcaatatgttggctgaagataaaacctt |
31344618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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