View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7804_low_8 (Length: 383)
Name: NF7804_low_8
Description: NF7804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7804_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 117 - 376
Target Start/End: Complemental strand, 44667113 - 44666872
Alignment:
| Q |
117 |
gtagtgtattgtgaaaataaattaacattacatctaattttaaacagtctcttaaaagcagttttagattgtaatatgccacaagaatactgtatttgat |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
44667113 |
gtagtgtattgtgaaaataaattaacattacatctaattttaaacagtctcttaaaagcagttttagattgtaatat------------------ttgat |
44667032 |
T |
|
| Q |
217 |
atactggaatctggaaaatgttatgacaatattttcagcacaatgaatttcattagtcttacgaaacatgaatttgtgttcttctactagggtaattgta |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44667031 |
atactggaatctggaaaatgttatgacaatattttcagcacaatgaatttcattagtcttacgaaacatgaatttgtgttcttctactagggtaattgta |
44666932 |
T |
|
| Q |
317 |
actttgataaaattctgccaatgagaattttgatcgacaggcatatggacagaacaccaa |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44666931 |
actttgataaaattctgccaatgagaattttgatcgacaggcatatggacagaacaccaa |
44666872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 44667215 - 44667182
Alignment:
| Q |
18 |
cttagaactcttcgtggtgaagacttttgaaatt |
51 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
44667215 |
cttagaactcttcgtggtgaagacttttgaaatt |
44667182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 48
Target Start/End: Original strand, 8374499 - 8374528
Alignment:
| Q |
19 |
ttagaactcttcgtggtgaagacttttgaa |
48 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
8374499 |
ttagaactcttcgtggtgaagacttttgaa |
8374528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University