View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7804_low_9 (Length: 342)
Name: NF7804_low_9
Description: NF7804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7804_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 206 - 335
Target Start/End: Complemental strand, 2475147 - 2475018
Alignment:
| Q |
206 |
caatgaaagtagtacctaaatgtcgaaacatgttcaaaaacagaagaaaaggttttcataagnnnnnnngagcacattgacatggttctaatgttccatt |
305 |
Q |
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| T |
2475147 |
caatgaaagtagtacctaaatgtcgaaacatgttcaaaaacagaagaaaaggttttcataaggaaaaaagagcacattgacatggttctaatgttccatt |
2475048 |
T |
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| Q |
306 |
ggaagagtcatagatatgatatgcatgttt |
335 |
Q |
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| T |
2475047 |
ggaagagtcatagatatgatatgtatgttt |
2475018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 205 - 322
Target Start/End: Original strand, 767273 - 767390
Alignment:
| Q |
205 |
tcaatgaaagtagtacctaaatgtcgaaacatgttcaaaaacagaagaaaaggttttcataagnnnnnnngagcacattgacatggttctaatgttccat |
304 |
Q |
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|||| |||||| ||||||||||||||||||||||||||| ||| |||||||| ||||||||| |||||||||||||||||||||| |||| || |
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| T |
767273 |
tcaaagaaagtggtacctaaatgtcgaaacatgttcaaagacaaaagaaaagaatttcataaggaaaaaagagcacattgacatggttctaaggttctat |
767372 |
T |
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| Q |
305 |
tggaagagtcatagatat |
322 |
Q |
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| T |
767373 |
tggaagagtcatagatat |
767390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 119 - 191
Target Start/End: Original strand, 762288 - 762360
Alignment:
| Q |
119 |
tttgctggaatagttgaatgattcagatagtgaatatttctaatcacttttacaactactgtttatcgattca |
191 |
Q |
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| T |
762288 |
tttgctggaagagttgaatgagtcagatagtgaatatttccaatcacttttgcaactactgtttatcgattca |
762360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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