View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7805_high_7 (Length: 276)

Name: NF7805_high_7
Description: NF7805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7805_high_7
NF7805_high_7
[»] scaffold0091 (3 HSPs)
scaffold0091 (11-125)||(29057-29172)
scaffold0091 (215-267)||(24720-24772)
scaffold0091 (215-267)||(28917-28969)
[»] scaffold0218 (1 HSPs)
scaffold0218 (11-124)||(14378-14492)
[»] chr3 (9 HSPs)
chr3 (11-122)||(16642300-16642412)
chr3 (11-123)||(4712800-4712913)
chr3 (11-125)||(14062778-14062893)
chr3 (11-125)||(14055037-14055152)
chr3 (21-121)||(13926858-13926960)
chr3 (215-267)||(16642133-16642185)
chr3 (215-267)||(4713007-4713059)
chr3 (225-267)||(14055242-14055284)
chr3 (222-267)||(14063000-14063045)
[»] chr6 (4 HSPs)
chr6 (11-125)||(14989375-14989490)
chr6 (11-123)||(14980263-14980376)
chr6 (215-267)||(14980470-14980522)
chr6 (88-125)||(10906902-10906939)
[»] chr1 (5 HSPs)
chr1 (11-125)||(51658662-51658777)
chr1 (18-125)||(13882243-13882351)
chr1 (222-267)||(13882481-13882526)
chr1 (17-110)||(1567069-1567166)
chr1 (222-264)||(51658870-51658912)
[»] chr7 (9 HSPs)
chr7 (11-125)||(48376787-48376902)
chr7 (11-125)||(16060512-16060627)
chr7 (21-125)||(4531759-4531865)
chr7 (215-267)||(16060374-16060426)
chr7 (88-125)||(9080338-9080375)
chr7 (222-267)||(9080206-9080251)
chr7 (222-267)||(16069022-16069067)
chr7 (215-267)||(48376637-48376689)
chr7 (93-125)||(37946032-37946064)
[»] chr8 (5 HSPs)
chr8 (11-125)||(23658526-23658649)
chr8 (11-125)||(23657751-23657884)
chr8 (216-267)||(23657648-23657699)
chr8 (216-267)||(23658423-23658474)
chr8 (21-56)||(29293929-29293964)
[»] scaffold1269 (1 HSPs)
scaffold1269 (11-102)||(1-93)
[»] scaffold0003 (2 HSPs)
scaffold0003 (51-125)||(130795-130870)
scaffold0003 (215-267)||(130633-130685)
[»] scaffold0319 (1 HSPs)
scaffold0319 (11-79)||(13570-13638)
[»] chr2 (1 HSPs)
chr2 (21-125)||(23656470-23656576)
[»] scaffold0063 (2 HSPs)
scaffold0063 (215-267)||(28466-28518)
scaffold0063 (87-125)||(28342-28380)
[»] scaffold0061 (1 HSPs)
scaffold0061 (215-262)||(18109-18156)
[»] chr4 (1 HSPs)
chr4 (35-104)||(3576240-3576311)
[»] scaffold1043 (1 HSPs)
scaffold1043 (222-267)||(1439-1484)
[»] chr5 (2 HSPs)
chr5 (222-267)||(25756795-25756840)
chr5 (222-267)||(25790961-25791006)


Alignment Details
Target: scaffold0091 (Bit Score: 100; Significance: 2e-49; HSPs: 3)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 29172 - 29057
Alignment:
Q  11 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 109  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  29172 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttata 29073  T
Q  110 tgttagtgatgatgag 125  Q
    ||||||||||||||||    
T  29072 tgttagtgatgatgag 29057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 24772 - 24720
Alignment:
Q  215 tgactacgagaatgacgacgtataattatgatgctgacttgaatgatgatgtc 267  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||| ||||    
T  24772 tgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 24720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 28969 - 28917
Alignment:
Q  215 tgactacgagaatgacgacgtataattatgatgctgacttgaatgatgatgtc 267  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||| ||||    
T  28969 tgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 28917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 11 - 124
Target Start/End: Complemental strand, 14492 - 14378
Alignment:
Q  11 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 109  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  14492 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttata 14393  T
Q  110 tgttagtgatgatga 124  Q
    |||||||||||||||    
T  14392 tgttagtgatgatga 14378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 11 - 122
Target Start/End: Complemental strand, 16642412 - 16642300
Alignment:
Q  11 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 109  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  16642412 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttata 16642313  T
Q  110 tgttagtgatgat 122  Q
    |||||||||||||    
T  16642312 tgttagtgatgat 16642300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 11 - 123
Target Start/End: Original strand, 4712800 - 4712913
Alignment:
Q  11 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 109  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||    
T  4712800 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagataatatatatatgtaattaaataaatacgatgagaaatgataatgtttata 4712899  T
Q  110 tgttagtgatgatg 123  Q
    ||||||||||||||    
T  4712900 tgttagtgatgatg 4712913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 14062778 - 14062893
Alignment:
Q  11 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 109  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||    
T  14062778 gagatgaataatgaggattccataatgtgacgaagagtgatgacgaagatattatacatatgtaattaaataaatacgatgagaaatgataatgtttata 14062877  T
Q  110 tgttagtgatgatgag 125  Q
    ||||||| ||||||||    
T  14062878 tgttagttatgatgag 14062893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 14055037 - 14055152
Alignment:
Q  11 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 109  Q
    ||||||||||||||||| |  |||||| |||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||    
T  14055037 gagatgaataatgaggattctataatgcgacgaagagtgatgacgaagatattatacatatgtaattaaataaatacgatgagaaatgataatgtttata 14055136  T
Q  110 tgttagtgatgatgag 125  Q
    |||||||||| |||||    
T  14055137 tgttagtgataatgag 14055152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 13926858 - 13926960
Alignment:
Q  21 atgaggaatacataatgtgacgaagagtgatgacgaa-gatattatatacatgtaattaa-taaatacgatgagaaatgataatgtttatatgttagtga 118  Q
    ||||||||| |||||||||| ||||||||||||| |  ||||||||||| || ||| ||| ||||||||||||||||||||||||||||||| |||||||    
T  13926858 atgaggaatccataatgtgatgaagagtgatgacaattgatattatatatatttaaataaataaatacgatgagaaatgataatgtttatattttagtga 13926957  T
Q  119 tga 121  Q
    |||    
T  13926958 tga 13926960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 16642185 - 16642133
Alignment:
Q  215 tgactacgagaatgacgacgtataattatgatgctgacttgaatgatgatgtc 267  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||| ||||    
T  16642185 tgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 16642133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 4713007 - 4713059
Alignment:
Q  215 tgactacgagaatgacgacgtataattatgatgctgacttgaatgatgatgtc 267  Q
    |||||| |||||||||||||||||||||||||| | |||||||||||| ||||    
T  4713007 tgactatgagaatgacgacgtataattatgatgataacttgaatgatggtgtc 4713059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 267
Target Start/End: Original strand, 14055242 - 14055284
Alignment:
Q  225 aatgacgacgtataattatgatgctgacttgaatgatgatgtc 267  Q
    ||||| ||||||||||||||||| |||||||||||||||||||    
T  14055242 aatgatgacgtataattatgatgatgacttgaatgatgatgtc 14055284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 14063000 - 14063045
Alignment:
Q  222 gagaatgacgacgtataattatgatgctgacttgaatgatgatgtc 267  Q
    |||||||| ||||||||||||||||| |||||||||||||| ||||    
T  14063000 gagaatgatgacgtataattatgatgatgacttgaatgatggtgtc 14063045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 4e-47; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 14989375 - 14989490
Alignment:
Q  11 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 109  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  14989375 gagatgaataatgacgaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttata 14989474  T
Q  110 tgttagtgatgatgag 125  Q
    ||||||||||||||||    
T  14989475 tgttagtgatgatgag 14989490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 11 - 123
Target Start/End: Original strand, 14980263 - 14980376
Alignment:
Q  11 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 109  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||    
T  14980263 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagataatatatatatgtaattaaataaatacgatgagaaatgataatgtttata 14980362  T
Q  110 tgttagtgatgatg 123  Q
    ||||||||||||||    
T  14980363 tgttagtgatgatg 14980376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 14980470 - 14980522
Alignment:
Q  215 tgactacgagaatgacgacgtataattatgatgctgacttgaatgatgatgtc 267  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||| ||||    
T  14980470 tgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 14980522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 125
Target Start/End: Original strand, 10906902 - 10906939
Alignment:
Q  88 atgagaaatgataatgtttatatgttagtgatgatgag 125  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  10906902 atgagaaatgataatgtttatattttagtgatgatgag 10906939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 4e-47; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 51658662 - 51658777
Alignment:
Q  11 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 109  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||    
T  51658662 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatatttata 51658761  T
Q  110 tgttagtgatgatgag 125  Q
    ||||||||||||||||    
T  51658762 tgttagtgatgatgag 51658777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 13882243 - 13882351
Alignment:
Q  18 ataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttatatgttagt 116  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  13882243 ataatgaggaatccatattgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagt 13882342  T
Q  117 gatgatgag 125  Q
    |||||||||    
T  13882343 gatgatgag 13882351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 13882481 - 13882526
Alignment:
Q  222 gagaatgacgacgtataattatgatgctgacttgaatgatgatgtc 267  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||    
T  13882481 gagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 13882526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 1567069 - 1567166
Alignment:
Q  17 aataatgaggaat-acataat-gtgacgaagagtgatgacgaa-gatattatatacatgtaattaa-taaatacgatgagaaatgataatgtttatat 110  Q
    ||||||||||||| | ||||| ||||| ||||||||||||||  ||||||||||| ||||||  || ||||||||||||||||||| ||| |||||||    
T  1567069 aataatgaggaatcatataattgtgacaaagagtgatgacgattgatattatatatatgtaaacaaataaatacgatgagaaatgacaatatttatat 1567166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 264
Target Start/End: Original strand, 51658870 - 51658912
Alignment:
Q  222 gagaatgacgacgtataattatgatgctgacttgaatgatgat 264  Q
    |||||||| ||||||||||||||||| ||||||||| ||||||    
T  51658870 gagaatgatgacgtataattatgatgatgacttgaacgatgat 51658912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 9e-45; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 48376902 - 48376787
Alignment:
Q  11 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 109  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  48376902 gagatgaataatgaggaatctataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttata 48376803  T
Q  110 tgttagtgatgatgag 125  Q
    ||||| ||||||||||    
T  48376802 tgttattgatgatgag 48376787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 16060627 - 16060512
Alignment:
Q  11 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttata 109  Q
    |||||||||||||||||||  ||||||||| || |||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||    
T  16060627 gagatgaataatgaggaatctataatgtgatgaggagtgatgacgaagatattatatatatgtaattaaataaatatgatgagaaatgataatgtttata 16060528  T
Q  110 tgttagtgatgatgag 125  Q
    ||||||||||||||||    
T  16060527 tgttagtgatgatgag 16060512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 125
Target Start/End: Original strand, 4531759 - 4531865
Alignment:
Q  21 atgaggaatacataatgtgacgaagagtgatgacga-agatattatatacatgt-aattaataaatacgatgagaaatgataatgtttatatgttagtga 118  Q
    ||||||||| |||||||||||||||||||||||| |  ||||||||||| |||| ||| ||||||||| ||||||||| |||||| |||||| ||| |||    
T  4531759 atgaggaatccataatgtgacgaagagtgatgacaattgatattatatatatgtaaataaataaatacaatgagaaataataatgcttatattttattga 4531858  T
Q  119 tgatgag 125  Q
    |||||||    
T  4531859 tgatgag 4531865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 16060426 - 16060374
Alignment:
Q  215 tgactacgagaatgacgacgtataattatgatgctgacttgaatgatgatgtc 267  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||| ||||    
T  16060426 tgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 16060374  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 125
Target Start/End: Complemental strand, 9080375 - 9080338
Alignment:
Q  88 atgagaaatgataatgtttatatgttagtgatgatgag 125  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9080375 atgagaaatgataatgtttatatgttagtgatgatgag 9080338  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 9080251 - 9080206
Alignment:
Q  222 gagaatgacgacgtataattatgatgctgacttgaatgatgatgtc 267  Q
    |||||||| ||||||||||||||||| |||||||||||||| ||||    
T  9080251 gagaatgatgacgtataattatgatgatgacttgaatgatggtgtc 9080206  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 16069022 - 16069067
Alignment:
Q  222 gagaatgacgacgtataattatgatgctgacttgaatgatgatgtc 267  Q
    |||||||| ||||||||||||||||| ||| |||||||||||||||    
T  16069022 gagaatgatgacgtataattatgatgatgatttgaatgatgatgtc 16069067  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 48376689 - 48376637
Alignment:
Q  215 tgactacgagaatgacgacgtataattatgatgctgacttgaatgatgatgtc 267  Q
    |||||| |||||||| ||||||||||||||||| |||||| ||||||| ||||    
T  48376689 tgactatgagaatgatgacgtataattatgatgatgacttaaatgatggtgtc 48376637  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 125
Target Start/End: Original strand, 37946032 - 37946064
Alignment:
Q  93 aaatgataatgtttatatgttagtgatgatgag 125  Q
    |||||||||||||||||| ||||||||||||||    
T  37946032 aaatgataatgtttatattttagtgatgatgag 37946064  T

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Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 23658649 - 23658526
Alignment:
Q  11 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatataca--------tgtaatt-aataaatacgatgagaaatgataa 101  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |        ||||||| ||||||||||||||||||| ||||    
T  23658649 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatatgtgtgtgtaattaaataaatacgatgagaaattataa 23658550  T
Q  102 tgtttatatgttagtgatgatgag 125  Q
    ||||||||||||||||||||||||    
T  23658549 tgtttatatgttagtgatgatgag 23658526  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 23657884 - 23657751
Alignment:
Q  11 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatatta------------------tatacatgtaatt-aataaatacgatga 91  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||                  |||| |||||||| ||||||||||||||    
T  23657884 gagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatatatatatatatatatatgtaattaaataaatacgatga 23657785  T
Q  92 gaaatgataatgtttatatgttagtgatgatgag 125  Q
    ||||| ||||||||||||||||||||||||||||    
T  23657784 gaaattataatgtttatatgttagtgatgatgag 23657751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 267
Target Start/End: Complemental strand, 23657699 - 23657648
Alignment:
Q  216 gactacgagaatgacgacgtataattatgatgctgacttgaatgatgatgtc 267  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||| ||||    
T  23657699 gactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 23657648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 216 - 267
Target Start/End: Complemental strand, 23658474 - 23658423
Alignment:
Q  216 gactacgagaatgacgacgtataattatgatgctgacttgaatgatgatgtc 267  Q
    ||||| |||||||||||| ||||||||||||| |||||||||||||| ||||    
T  23658474 gactatgagaatgacgacttataattatgatgatgacttgaatgatggtgtc 23658423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 56
Target Start/End: Complemental strand, 29293964 - 29293929
Alignment:
Q  21 atgaggaatacataatgtgacgaagagtgatgacga 56  Q
    ||||||||| ||||||||||||||||||||||||||    
T  29293964 atgaggaatccataatgtgacgaagagtgatgacga 29293929  T

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Target: scaffold1269 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold1269
Description:

Target: scaffold1269; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 93 - 1
Alignment:
Q  11 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataat 102  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||    
T  93 gagatgaataatgaggattccataatgtgacgaagagtgatgacgaagatattatacatatgtaattaaataaatacgatgagaaatgataat 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 51 - 125
Target Start/End: Complemental strand, 130870 - 130795
Alignment:
Q  51 tgacgaagatattatatacatgtaattaa-taaatacgatgagaaatgataatgtttatatgttagtgatgatgag 125  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  130870 tgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatgag 130795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 130685 - 130633
Alignment:
Q  215 tgactacgagaatgacgacgtataattatgatgctgacttgaatgatgatgtc 267  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||| ||||    
T  130685 tgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtc 130633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0319 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0319
Description:

Target: scaffold0319; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 79
Target Start/End: Original strand, 13570 - 13638
Alignment:
Q  11 gagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaattaa 79  Q
    ||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||| ||||||||||    
T  13570 gagatgaataatgaggaatccatgatgtgacaaagagtgatgacgaagatattatatatatgtaattaa 13638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 125
Target Start/End: Original strand, 23656470 - 23656576
Alignment:
Q  21 atgaggaatacataatgtgacgaagagtgatgacga-agatattatatacatgtaa-ttaataaatacgatgagaaatgataatgtttatatgttagtga 118  Q
    ||||||||| ||||||||||||||||||||||||||  ||||||||||| ||| || | ||||||||| ||||||||||||||| ||||||| ||| |||    
T  23656470 atgaggaatccataatgtgacgaagagtgatgacgattgatattatatatatgaaagtaaataaatacaatgagaaatgataatatttatattttaatga 23656569  T
Q  119 tgatgag 125  Q
    | |||||    
T  23656570 taatgag 23656576  T

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Target: scaffold0063 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 28466 - 28518
Alignment:
Q  215 tgactacgagaatgacgacgtataattatgatgctgacttgaatgatgatgtc 267  Q
    |||||| |||||||||||||||||||||||||| ||| |||||||||| ||||    
T  28466 tgactatgagaatgacgacgtataattatgatgatgaattgaatgatggtgtc 28518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 125
Target Start/End: Original strand, 28342 - 28380
Alignment:
Q  87 gatgagaaatgataatgtttatatgttagtgatgatgag 125  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  28342 gatgagaaatgatgatgtttatatgttagtgatgatgag 28380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 262
Target Start/End: Original strand, 18109 - 18156
Alignment:
Q  215 tgactacgagaatgacgacgtataattatgatgctgacttgaatgatg 262  Q
    |||||| ||||||||||| |||| ||||||||| ||||||||||||||    
T  18109 tgactatgagaatgacgaagtatgattatgatgatgacttgaatgatg 18156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 104
Target Start/End: Original strand, 3576240 - 3576311
Alignment:
Q  35 atgtgacgaagagtgatgacga-agatattatatacatgta-attaataaatacgatgagaaatgataatgt 104  Q
    ||||||||||||||||||||||  ||| ||||||| ||||| || |||||||||||||||| ||||| ||||    
T  3576240 atgtgacgaagagtgatgacgattgattttatataaatgtatataaataaatacgatgagagatgatgatgt 3576311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 1439 - 1484
Alignment:
Q  222 gagaatgacgacgtataattatgatgctgacttgaatgatgatgtc 267  Q
    ||||||||  |||||||||||||||| ||| |||||||||||||||    
T  1439 gagaatgataacgtataattatgatgatgatttgaatgatgatgtc 1484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 25756795 - 25756840
Alignment:
Q  222 gagaatgacgacgtataattatgatgctgacttgaatgatgatgtc 267  Q
    |||||||| ||| ||||||||||||| ||| |||||||||||||||    
T  25756795 gagaatgatgacttataattatgatgatgatttgaatgatgatgtc 25756840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 25791006 - 25790961
Alignment:
Q  222 gagaatgacgacgtataattatgatgctgacttgaatgatgatgtc 267  Q
    |||||||| ||| ||||||||||||| ||| |||||||||||||||    
T  25791006 gagaatgatgacttataattatgatgatgatttgaatgatgatgtc 25790961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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