View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7805_low_1 (Length: 630)
Name: NF7805_low_1
Description: NF7805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7805_low_1 |
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| [»] chr2 (3 HSPs) |
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| [»] chr6 (3 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 552; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 18 - 630
Target Start/End: Original strand, 16149902 - 16150514
Alignment:
| Q |
18 |
gagttttcttccttggaaaacttacaaagttgtaaaagatcattagcatcaccattcatgttattttgatgaatcttattaaagaaattatgaatatctt |
117 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
16149902 |
gagttttcttccttggataacttacaaagttgtaaaagatcattagcatcaccattcatgttatcttgatgaatcttattaaagaaattatgaatatctt |
16150001 |
T |
|
| Q |
118 |
tctcaagaaatcgaagatctccacgttttacatttttctcaagctcaataacacgcattatttgcttgactgaaagatcggcttcttttaatagcaatat |
217 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16150002 |
tctcaagaaatcgaagatctccatgttttacatttttctcaagctccataacacgcattatttgcttgactgaaagatcggcttcttttaatagcaatat |
16150101 |
T |
|
| Q |
218 |
ccgcttctcttcttccttagaaattttgcggtaagatgcaaggaagtgcacttgatctgaaggtagtaaatcatgattgtggttagatataaattcaata |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
16150102 |
ccgcttctcttcttccttagaaattttgcggtaagatgcaaggaagtgcacttgatctgaaggtagtaaatcatgattgtggttagatataaattcaaaa |
16150201 |
T |
|
| Q |
318 |
acctgccactcttctggaaaaatctcaaaggatttcttcaatttgattgtcatgcttgccttgcatccacatctcgaagatggtctatttcgttgttctt |
417 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16150202 |
acctgccactcttctggaaaaatctcgaaggatttcttcaatttgattgtcatgcttgccttgcatccacatctcgaagatggtctatttcgttgttctt |
16150301 |
T |
|
| Q |
418 |
tagacggatcttgaannnnnnnatcaggaaatcctccacggtgacaaaacaaatctctcctatgcattatcccatttttattaacaaacctaccttttct |
517 |
Q |
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||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
16150302 |
tagacggatcttgaatttttttatcaggaaatcctccgcggtgacaaaacaaatctctcctgtgcattatcccatttttattaacaaacctaccttttct |
16150401 |
T |
|
| Q |
518 |
aattgagaacccactccttttggaataattctcataaaatttgaaagcttcttcctcacttagaaaacactgccctataaaaggttcaaaatggttttca |
617 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
16150402 |
aattgagaacccactccttttggcataattctcataaaatttgaaagcttcttcctcacttagaaaacactgccctataaaaggttcaaaatcgttttca |
16150501 |
T |
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| Q |
618 |
atagtaattgctt |
630 |
Q |
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||||||||||||| |
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| T |
16150502 |
atagtaattgctt |
16150514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 445 - 608
Target Start/End: Original strand, 3669618 - 3669775
Alignment:
| Q |
445 |
gaaatcctccacggtgacaaaacaaatctctcctatgcattatcccatttttattaacaaacctaccttttctaattgagaacccactccttttggaata |
544 |
Q |
| |
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|||||||| ||| ||||||||| ||| | ||||||| || ||||||||||| |||| || |||||| || |||||||||| | ||||||| ||||| |
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| T |
3669618 |
gaaatccttcaccgtgacaaaaacaatatttcctatgtatcatcccatttttcttaattaattgacctttactgattgagaaccga-tccttttagaata |
3669716 |
T |
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| Q |
545 |
attctcataaaatttgaaagcttcttcctcacttagaaaacactgccctataaaaggttcaaaa |
608 |
Q |
| |
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||||||| || ||||||||| |||| ||||||||||||| || ||||||||||||||| |
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| T |
3669717 |
t-----ataaaatctggaagcttctttctcatttagaaaacactgaccaataaaaggttcaaaa |
3669775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 551 - 605
Target Start/End: Original strand, 22141602 - 22141656
Alignment:
| Q |
551 |
ataaaatttgaaagcttcttcctcacttagaaaacactgccctataaaaggttca |
605 |
Q |
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|||||||||| ||||||||| |||| ||||||||||||| || |||||||||||| |
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| T |
22141602 |
ataaaatttggaagcttctttctcatttagaaaacactgaccaataaaaggttca |
22141656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 439; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 18 - 630
Target Start/End: Original strand, 4652502 - 4653106
Alignment:
| Q |
18 |
gagttttcttccttggaaaacttacaaagttgtaaaagatcattagcatcaccattcatgttattttgatgaatcttattaaagaaattatgaatatctt |
117 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4652502 |
gagttttcatccttggaaaacttacaaagttgtaaaagatcattaacatcaccattcatgttatcttgatgaatcttattaaagaaattatgaatatctt |
4652601 |
T |
|
| Q |
118 |
tctcaagaaatcgaagatctccacgttttacatttttctcaagctcaataacacgcattatttgcttgactgaaagatcggcttcttttaatagcaatat |
217 |
Q |
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| ||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||| ||||| |||||||| |||||||||||||||||||| |
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| T |
4652602 |
ttcgaagaaatcgaagatctccatgttttacgtttttctcaagctccataacacgcattatttgtttgaccgaaagatcagcttcttttaatagcaatat |
4652701 |
T |
|
| Q |
218 |
ccgcttctcttcttccttagaaattttgcggtaagatgcaaggaagtgcacttgatctgaaggtagtaaatcatgattgtggttagatataaattcaata |
317 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||| |
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| T |
4652702 |
tcgcttcccgtcttccttagaaattttgcggtaagatgcaaggaagtgcacttgatctgaaggtagtaaattatgattgtggctggatataaattcaata |
4652801 |
T |
|
| Q |
318 |
acctgccactcttctggaaaaatctcaaaggatttcttcaatttgattgtcatgcttgccttgcatccacatctcgaagatggtctatttcgttgttctt |
417 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
4652802 |
tcctgccactcttctggaaaaatctcaaaggatttcttcaatttgattgtcatgcttgccttgcatcc--------aagattgtctatttcgttgttctt |
4652893 |
T |
|
| Q |
418 |
tagacggatcttgaannnnnnnatcaggaaatcctccacggtgacaaaacaaatctctcctatgcattatcccatttttattaacaaacctaccttttct |
517 |
Q |
| |
|
|||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4652894 |
tagacggatcatgattttttttatcagaaaatcctccacggtgacaaaacaaatctctcctatgcattatcccatttttattaacaaacctaccttttct |
4652993 |
T |
|
| Q |
518 |
aattgagaacccactccttttggaataattctcataaaatttgaaagcttcttcctcacttagaaaacactgccctataaaaggttcaaaatggttttca |
617 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| | || || ||||||||||| |||| ||||||| |
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|
| T |
4652994 |
aattgagaacccactcattttggcataattctcataaaatttgaaagcttcttcctcacttagaaaatattgtccaataaaaggttcgaaatagttttca |
4653093 |
T |
|
| Q |
618 |
atagtaattgctt |
630 |
Q |
| |
|
||||||||||||| |
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|
| T |
4653094 |
atagtaattgctt |
4653106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 553 - 630
Target Start/End: Original strand, 8925359 - 8925436
Alignment:
| Q |
553 |
aaaatttgaaagcttcttcctcacttagaaaacactgccctataaaaggttcaaaatggttttcaatagtaattgctt |
630 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8925359 |
aaaatttgaaagcttcttcctcacttagaaaacaccgccctataaaaggttcaaaatcgttttcaatagtaattgctt |
8925436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 553 - 630
Target Start/End: Original strand, 8935616 - 8935693
Alignment:
| Q |
553 |
aaaatttgaaagcttcttcctcacttagaaaacactgccctataaaaggttcaaaatggttttcaatagtaattgctt |
630 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8935616 |
aaaatttgaaagcttcttcctcacttagaaaacaccgccctataaaaggttcaaaatcgttttcaatagtaattgctt |
8935693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 156 - 630
Target Start/End: Complemental strand, 23302271 - 23301797
Alignment:
| Q |
156 |
tcaagctcaataacacgcattatttgcttgactgaaagatcggcttcttttaatagcaatatccgcttctcttcttccttagaaattttgcggtaagatg |
255 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23302271 |
tcaagctccataacacgcattatttgcttgactgaaagatctgcttcttttaatagcaatatccgcttctcttcttccttagaaattttgcggtaagatg |
23302172 |
T |
|
| Q |
256 |
caaggaagtgcacttgatctgaaggtagtaaatcatgattgtggttagatataaattcaataacctgccactcttctggaaaaatctcaaaggatttctt |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
23302171 |
caaggaagtgcacttgatctgaaggtagtaaatcatgattgtggttagatataaattcaataacctgccactcttctggaaaaatctctaaggatttctt |
23302072 |
T |
|
| Q |
356 |
caatttgattgtcatgcttgccttgcatccacatctcgaagatggtctatttcgttgttctttagacggatcttgaannnnnnnatcaggaaatcctcca |
455 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
23302071 |
caatttgattgtcatgcttgccttgcatccacatctcgaagatggtctatttcgttgttctttagacggatcttgaatttttttatcaggaaatcctcct |
23301972 |
T |
|
| Q |
456 |
cggtgacaaaacaaatctctcctatgcattatcccatttttattaacaaacctaccttttctaattgagaacccactccttttggaataattctcataaa |
555 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
23301971 |
cggtgacaaaacaaatctctcctttgcattatcccatttttattaacaaacctaccttttttaattgagaacccactccttttggcataattctcataaa |
23301872 |
T |
|
| Q |
556 |
atttgaaagcttcttcctcacttagaaaacactgccctataaaaggttcaaaatggttttcaatagtaattgctt |
630 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
23301871 |
atttgaaagcttcttcctcacttagaaaacattgccctataaaaggttcaaaatcgttttcaatagtaattgctt |
23301797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 562 - 608
Target Start/End: Complemental strand, 26926252 - 26926206
Alignment:
| Q |
562 |
aagcttcttcctcacttagaaaacactgccctataaaaggttcaaaa |
608 |
Q |
| |
|
|||||||||||||||||| |||||| ||||| ||||||||||||||| |
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| T |
26926252 |
aagcttcttcctcacttaaaaaacattgcccaataaaaggttcaaaa |
26926206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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