View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7805_low_10 (Length: 257)

Name: NF7805_low_10
Description: NF7805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7805_low_10
NF7805_low_10
[»] chr1 (15 HSPs)
chr1 (19-241)||(34309676-34309899)
chr1 (44-153)||(45531903-45532012)
chr1 (50-153)||(45525799-45525902)
chr1 (44-124)||(35190668-35190748)
chr1 (44-124)||(35295645-35295725)
chr1 (44-124)||(35147654-35147734)
chr1 (44-120)||(35205250-35205326)
chr1 (44-92)||(35476643-35476691)
chr1 (44-113)||(35200237-35200306)
chr1 (44-120)||(35212292-35212368)
chr1 (44-124)||(35219396-35219476)
chr1 (44-124)||(35225239-35225319)
chr1 (46-122)||(35252395-35252471)
chr1 (44-91)||(35248593-35248640)
chr1 (44-92)||(35216256-35216304)
[»] chr2 (1 HSPs)
chr2 (44-169)||(33138357-33138482)
[»] chr3 (5 HSPs)
chr3 (44-181)||(899409-899547)
chr3 (47-156)||(23332094-23332203)
chr3 (47-172)||(19246711-19246836)
chr3 (47-172)||(17664304-17664433)
chr3 (49-108)||(53924101-53924160)
[»] chr7 (2 HSPs)
chr7 (44-156)||(38632183-38632295)
chr7 (44-126)||(38634919-38635001)


Alignment Details
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 34309676 - 34309899
Alignment:
Q  19 gttcattatcaaatctgtatgcatta-tcatcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcatcccacaaat 117  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  34309676 gttcattatcaaatccgtatgcattaatcatcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcatcccacgaat 34309775  T
Q  118 ttcaagcgagtacacaagacaaagcttagcaacttcaggaaacaggtaaaaattgcaaagacaaagaatacaagaactgtgnnnnnnnngttgaaagtga 217  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||        |||||||||||    
T  34309776 ttcaagcgagtacacaagacaaagcttagcaacttcaggaaacatgtaaaaattgcaaagacaaagaatacaagaactgtgaaaaaaaagttgaaagtga 34309875  T
Q  218 ttcatattatcacatatgaagtat 241  Q
    ||||||||||||||||||||||||    
T  34309876 ttcatattatcacatatgaagtat 34309899  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 44 - 153
Target Start/End: Original strand, 45531903 - 45532012
Alignment:
Q  44 atcatcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcatcccacaaatttcaagcgagtacacaagacaaagct 143  Q
    ||||| |||||||| |||||||| ||||| ||||||||||||||||||| |||| ||||||||||||||| |||||| ||| |  ||||||||||||| |    
T  45531903 atcattttgaacacaagataagctgcatattgagtatttggggacaaggcaagattgttaatcatcccacgaatttcgagccaccacacaagacaaagtt 45532002  T
Q  144 tagcaacttc 153  Q
    ||||||||||    
T  45532003 tagcaacttc 45532012  T

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Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 50 - 153
Target Start/End: Original strand, 45525799 - 45525902
Alignment:
Q  50 ttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcatcccacaaatttcaagcgagtacacaagacaaagcttagcaa 149  Q
    ||||||||||||||||| ||||||||||||||||| ||||||| |||| ||||||||||||||| |||||| ||| |  ||||||||| ||| |||||||    
T  45525799 ttgaacacgagataagctgcatactgagtatttggagacaaggcaagattgttaatcatcccacgaatttcgagccaccacacaagacgaagattagcaa 45525898  T
Q  150 cttc 153  Q
    ||||    
T  45525899 cttc 45525902  T

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Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 35190668 - 35190748
Alignment:
Q  44 atcatcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcatcccacaaatttcaagc 124  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||| ||| || || |||||||||| ||| ||||||    
T  35190668 atcatcttgaacacaagataagccgcatactgggtatttggggacaaggcaagggtatttatcatcccacgaatatcaagc 35190748  T

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Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 35295725 - 35295645
Alignment:
Q  44 atcatcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcatcccacaaatttcaagc 124  Q
    |||||||||||||| |||||||| ||||| ||||||||||||||||||| | | ||||| |||||||||| ||||||||||    
T  35295725 atcatcttgaacacaagataagctgcatattgagtatttggggacaaggcaggggtgtttatcatcccacgaatttcaagc 35295645  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 35147654 - 35147734
Alignment:
Q  44 atcatcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcatcccacaaatttcaagc 124  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||  ||| ||||| ||| |||||| ||| ||||||    
T  35147654 atcatcttgaacacaagataagccgcatactgggtatttggggacaagctaagggtgtttatcgtcccactaatatcaagc 35147734  T

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Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 120
Target Start/End: Original strand, 35205250 - 35205326
Alignment:
Q  44 atcatcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcatcccacaaatttc 120  Q
    |||||||||||||| |||||||| ||||| ||||||||||| ||||| | |||| ||||||||||||||| ||||||    
T  35205250 atcatcttgaacacaagataagctgcatattgagtatttggagacaatgcaagattgttaatcatcccacgaatttc 35205326  T

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Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 35476643 - 35476691
Alignment:
Q  44 atcatcttgaacacgagataagccgcatactgagtatttggggacaagg 92  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  35476643 atcatcttgaacacaagataagccgcatactgagtatttggggacaagg 35476691  T

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Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 113
Target Start/End: Original strand, 35200237 - 35200306
Alignment:
Q  44 atcatcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcatcccac 113  Q
    |||||||||||||| |||||||| ||||||||||||||||||||||| | |||  |||| ||||||||||    
T  35200237 atcatcttgaacacaagataagctgcatactgagtatttggggacaatgcaagcatgtttatcatcccac 35200306  T

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Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 120
Target Start/End: Original strand, 35212292 - 35212368
Alignment:
Q  44 atcatcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcatcccacaaatttc 120  Q
    |||||||||||||| ||||||||||||||  |||||||||| ||||||| ||||  |||||||| ||||| ||||||    
T  35212292 atcatcttgaacacaagataagccgcatagcgagtatttggagacaaggcaagatcgttaatcaccccacgaatttc 35212368  T

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Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 35219396 - 35219476
Alignment:
Q  44 atcatcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcatcccacaaatttcaagc 124  Q
    |||||||||||||| |||||||  |||||| |||||||||| ||||||| ||| ||||| ||| | |||||||||||||||    
T  35219396 atcatcttgaacacaagataagttgcatacagagtatttggagacaaggtaagggtgtttatcttgccacaaatttcaagc 35219476  T

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Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 124
Target Start/End: Original strand, 35225239 - 35225319
Alignment:
Q  44 atcatcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcatcccacaaatttcaagc 124  Q
    |||||||||||||| |||||||   ||||| |||||||||||||||||| ||| ||||| | | |||||| ||||||||||    
T  35225239 atcatcttgaacacaagataagttacataccgagtatttggggacaaggcaagggtgtttaacttcccacgaatttcaagc 35225319  T

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Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 122
Target Start/End: Original strand, 35252395 - 35252471
Alignment:
Q  46 catcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcatcccacaaatttcaa 122  Q
    |||||||||||| ||||| ||  |||||||||||||||||||||||| ||  ||||| ||||| |||||||| ||||    
T  35252395 catcttgaacacaagatacgctacatactgagtatttggggacaaggcaatggtgtttatcataccacaaatgtcaa 35252471  T

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Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 35248593 - 35248640
Alignment:
Q  44 atcatcttgaacacgagataagccgcatactgagtatttggggacaag 91  Q
    |||| ||||||||| |||||||| ||||||||||||||||||||||||    
T  35248593 atcaccttgaacacaagataagctgcatactgagtatttggggacaag 35248640  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 35216256 - 35216304
Alignment:
Q  44 atcatcttgaacacgagataagccgcatactgagtatttggggacaagg 92  Q
    |||||||| ||||| |||||||  ||||||||||||||||| |||||||    
T  35216256 atcatcttaaacacaagataagttgcatactgagtatttggagacaagg 35216304  T

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Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 44 - 169
Target Start/End: Complemental strand, 33138482 - 33138357
Alignment:
Q  44 atcatcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcatcccacaaatttcaagcgagtacacaagacaaagct 143  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||| ||||||| ||||||||| |||| ||||||    
T  33138482 atcatcttgaacacgagataagccgcgtactgagtatttggggacaaggaaagagtgttaatagtcccacgaatttcatgcgagtacaaaagagaaagct 33138383  T
Q  144 tagcaacttcaggaaacaggtaaaaa 169  Q
    |||||||||||||||||  |||||||    
T  33138382 tagcaacttcaggaaacctgtaaaaa 33138357  T

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Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 44 - 181
Target Start/End: Complemental strand, 899547 - 899409
Alignment:
Q  44 atcatcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcatcccacaaatttcaagcgagtacacaagacaaagct 143  Q
    |||||||||||||| |||||||||||||||  ||||||| |||||||||||| ||||||||| || |||| ||||||||||||| |||||||||||||||    
T  899547 atcatcttgaacacaagataagccgcataccaagtattttgggacaaggaaaaagtgttaattattccacgaatttcaagcgagaacacaagacaaagct 899448  T
Q  144 tagcaacttcaggaaacaggtaaa-aattgcaaagacaa 181  Q
    || | ||||||||||||  ||||| ||||||||||||||    
T  899447 taacgacttcaggaaacctgtaaataattgcaaagacaa 899409  T

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Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 47 - 156
Target Start/End: Original strand, 23332094 - 23332203
Alignment:
Q  47 atcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcatcccacaaatttcaagcgagtacacaagacaaagcttag 146  Q
    ||||| |||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||| ||| ||||| ||||||||    
T  23332094 atcttaaacacgaggtaagctgcatactgagtatttggggacaatgaaagagtgttaataatcccacaaatttcatgcgagaacaaaagacgaagcttag 23332193  T
Q  147 caacttcagg 156  Q
    ||||||||||    
T  23332194 caacttcagg 23332203  T

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Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 47 - 172
Target Start/End: Complemental strand, 19246836 - 19246711
Alignment:
Q  47 atcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcatcccacaaatttcaagcgagtacacaagacaaagcttag 146  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| || |||| ||||||| ||||| |||||||||  |||||||    
T  19246836 atcttgaagacgagataagctgcatactgagtatttggggacaaggaaagagtcttaataataccacgaatttcatgcgagaacacaagactgagcttag 19246737  T
Q  147 caacttcaggaaacaggtaaaaattg 172  Q
    ||||||| || |||  ||||||||||    
T  19246736 caacttccgggaacctgtaaaaattg 19246711  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 172
Target Start/End: Complemental strand, 17664433 - 17664304
Alignment:
Q  47 atcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagt----gttaatcatcccacaaatttcaagcgagtacacaagacaaagc 142  Q
    |||||||| ||||||||||| ||||||||||||||||||||||| ||||||||     ||||| || |||| ||||||| ||||| |||||||||  |||    
T  17664433 atcttgaagacgagataagctgcatactgagtatttggggacaatgaaagagtcttaattaataataccacgaatttcatgcgagaacacaagactgagc 17664334  T
Q  143 ttagcaacttcaggaaacaggtaaaaattg 172  Q
    ||||||||||| || |||  ||||||||||    
T  17664333 ttagcaacttccgggaacctgtaaaaattg 17664304  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 53924160 - 53924101
Alignment:
Q  49 cttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcat 108  Q
    ||||||||| ||||||||||||||| |||||||||||||||||  ||| ||||| |||||    
T  53924160 cttgaacacaagataagccgcataccgagtatttggggacaagacaagggtgtttatcat 53924101  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 156
Target Start/End: Original strand, 38632183 - 38632295
Alignment:
Q  44 atcatcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcatcccacaaatttcaagcgagtacacaagacaaagct 143  Q
    |||| ||||||||| ||||||||  |||||||||||||| | ||||||| ||||||||  ||| | |||| ||||||||||||  |||||  || |||||    
T  38632183 atcaacttgaacacaagataagctacatactgagtatttcgagacaaggcaagagtgtctatccttccacgaatttcaagcgaaaacacatcacgaagct 38632282  T
Q  144 tagcaacttcagg 156  Q
     ||||||||||||    
T  38632283 cagcaacttcagg 38632295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 44 - 126
Target Start/End: Original strand, 38634919 - 38635001
Alignment:
Q  44 atcatcttgaacacgagataagccgcatactgagtatttggggacaaggaaagagtgttaatcatcccacaaatttcaagcga 126  Q
    ||||||| |||||| ||||||||  |||||||||||||| |||||||| |||||||||| ||  | |||| ||||||||||||    
T  38634919 atcatctggaacacaagataagctacatactgagtatttcgggacaagtaaagagtgtttattcttccacgaatttcaagcga 38635001  T

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