View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7805_low_3 (Length: 445)
Name: NF7805_low_3
Description: NF7805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7805_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 13 - 429
Target Start/End: Original strand, 41561638 - 41562060
Alignment:
| Q |
13 |
gagagtctaatgcaggagttgatgnnnnnnnctcacgagttttataatttgccatcggaggaaaaggaggagtttggtgacgatggcgatcccctctcac |
112 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41561638 |
gagagtctaatgcaggagttgatgaaaaaaactcacgagttttataatttgccagaggaggaaaaggaggagtttggtgacgatggcgatcccctctcac |
41561737 |
T |
|
| Q |
113 |
ccatcaggcatggcactagcttccatcctccagcagagagttttaattattggagagattatctcaaactcttaacatctccccaattcagtttccctca |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41561738 |
ccatcaggcatggcactagcttccatcctccagcagagagttttaattattggagagattatctcaaactcttaacatctccccaattcagtttccctca |
41561837 |
T |
|
| Q |
213 |
caaaccactaggttacaggtgattaagttcaacacacac------nnnnnnnnnnnntctgaattaccgacgaaaattagggagaaaaattgagagatca |
306 |
Q |
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|||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
41561838 |
caaaccaccaggttacaggtgattaagttcaacacacacaaaaaaaaaaaaaaaaattctgaattgccgacgaaaattagggagaaaaattgagagatca |
41561937 |
T |
|
| Q |
307 |
tacactaattttagagctcatacttaacaaggtgtttccaaccctatttgagataactcgaatctcaggtttgggtcaatctgacgcatcatgtgtagtc |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
41561938 |
tacactaattttagagctcatacttaacaaggtgtttccaaccctatttgagataactcgaatctcaggtttgggtcaatctgacgcatcatgtgtggtc |
41562037 |
T |
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| Q |
407 |
cattttgaaagtactaccattgt |
429 |
Q |
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||||||||||||||||||||||| |
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| T |
41562038 |
cattttgaaagtactaccattgt |
41562060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 13 - 245
Target Start/End: Original strand, 41556766 - 41556997
Alignment:
| Q |
13 |
gagagtctaatgcaggagttgatgnnnnnnnctcacgagttttataatttgccatcggaggaaaaggaggagtttggtgacgatggcgatcccctctcac |
112 |
Q |
| |
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|||||||||||| ||||||||||| ||| ||||||| || ||||||| |||||||||| | |||||||||||| |||| || || |||||| |
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| T |
41556766 |
gagagtctaatggaggagttgatgaaaaaatctctcgagtttcatgatttgccggtggaggaaaagaaagagtttggtgacaatggtgagcctttctcac |
41556865 |
T |
|
| Q |
113 |
ccatcaggcatggcactagcttccatcctccagcagagagttttaattattggagagattatctcaaactcttaacatctccccaattcagtttccctca |
212 |
Q |
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||||||| ||||||||||||||||||| ||||||||||||| | ||| |||||||||||| |||||| ||||||||||||||||||||| ||||||||| |
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| T |
41556866 |
ccatcagacatggcactagcttccatcttccagcagagagtgtacatttttggagagattacctcaaagtcttaacatctccccaattcaatttccctca |
41556965 |
T |
|
| Q |
213 |
caaaccactaggttacaggtgattaagttcaac |
245 |
Q |
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|||||||| ||||||||||| |||||||||||| |
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| T |
41556966 |
caaaccaccaggttacaggt-attaagttcaac |
41556997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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